Gene detail

Detailed information of ANN08192-RA in Nanomia septata

Genomic Location: chr4:54192126...54196526
NR annotation: XP_002161815.3, methionine--tRNA ligase, cytoplasmic [Hydra vulgaris]
Species Nanomia septata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN08192-RA

ATGTCGAGTGTAAAAATTTTCTCCGACGTTGGGAATGTCTTTTCTCTTCGACTCCTTGCATCATGTTATGCTACTGGATGTCGACCGAACGTAGAAATTGTAGATAGTAAAAACTTTAAGTTACACGGATCAAGTGTTCGATTGCCTATCGTCCAAGTAAAACCTGGTCATTATATATTTAGTCACAATGTCGCTACTAgttatatttttgaccaatccGAAAAGTTTAAATTATCTGATATGGACAAGGCAAAAGTTGACGAGTTAGTCGAATGGGATGGTATTAAATTGCAACCTCCGATGCTTCAGTTTTTATCAGCCCATGTACTAAGTGCTAAAAATGATGCAGCTTCTCACGAGGCCTTGGAAAAGACATTTTCGACCTTAAACTCTTTACTAGAAAAGAAACAATACCTATCAGGGACACATTTAACTGCTGCTGATGCTGCAATATGGGGTAGTTTATACTGTGTTATGCAAATTAAAGATGTTAAAGATTCAGCTAATAACTATCCAGCCCTTGCTTCTTGGTTTCAAAAATTGTGTTCGAATGAAGCATTCTCTAAAGCTGTTGAAGGTGTTACAGGCAACAAAGGTTTATCTGTATTTAAGGGTTCATTAGAATCGTATAATGCATTGCCTCAAATCAAGAAGATTTGccaatcaaaaaaagaaaaaagtgaaaatgaGAAGAATCAATTAAGTGAAGACAACCAGGTTACACCAAAGCAAATTGAGCAGGCGAAAGACGAGTGGGCTAAAGGGCTAAGTGATATTAAACCAAGGATTTACCAGCATCCCATTTTACCTGTCAAAGGAGAGAAAAATATTCTTATTACTTCAGCTTTACCTTACGTTAATAATGTCCCTCATTTGGGAAATATAATTGGTTGTGTTCTCAGTGCTGATGTGTATGCAAGGTATTGCAGACTTCGCAATTATAACTGTTTATATGTTAGTGGTACTGATGAGTATGGAACTGCTACTGAAACAAAAGCTTTAGCTGAAGGTGTTACTCCTCGTGAAATTTGTGACAAATATAACCATTTACACACCAACATCTATAAATGGTTCAATATTGATTTTGATTATTTCGGCAGAACATCAACAGATAAACAAACTGAAATAGCTCAAGACATATTTTGGAAGATTTACAAGAATGGTTATTTCCTTGAAGATAATGTTGAACAACTTCAATGTACAAAATGTAATAAATTTCTTGCTGATCGTTTTGTTGAAGGTATCTGTCCATTATGTTCTTATGAGGATGCACGAGGAGATCAGTGTGATGCTTGTGGTAAGCTTATTAATGCTATTGAACTAATCAAACCTAGGTGTAAGATATGCAGTAGTACACCTGTAGTGAAAACATCCAGACACGTGTTTTTAGATCTACCTAAGATCTCACCTCAGTTAGAGAGTTGGTTAACTAAAAAAGAGGAAGATATGTGGACACATAACGCAAGAACCATAACGAAGGCTTGGGTGGCGGAAGGATTGAAGCCCAGGTGTGTAACTCGTGACTTGAAATGGGGTACTCCAGTTCCTTTAGAAGGTTTTAATGACAAAGTATTTTATGTATGGTTTGATGCACCCATAGGATATATTTCAATCACTGCTAATTATACCAATGAATGGGAGAAATGGTGGAAGAATCCTGATGATGTTACATTAGTTAATTTTATGGCTAAAGACAATGTTCCATTCCATACTGTTGTTTTTCCATCTTCGCTCATCGCAGCGAAAGACAACTACACATTGGTTAATCATCTTAGTGCTACAGAATATTTGAATTATGAAGACAGTAAATTTTCAAAGAGTCGTGGTGTTGGTGTATTTGGTGATCATGCTGAAAGTACTGGAATTCCATCCGATATATTCagattttatttattatttgtaCGTCCTGAAACAAATGATAGTGCATTCAAATGGTCAACAATGGCTGGAACAAATAACTCTGAACTTCTCAATAATCTTGGTAATTTCATCAACAGATCATTAATGTTTATGAAGAATGCTTTCAAATCGATAGTTCCTGACATGTCTTTTACTGATGAAGAGTACAAACTAATTGCAAGTATTAACATTGATTTAAAGAATTATGTTGACTATCTTGAGAAATTCAAGATCAGAGATGCTGTTCGTTTTGCTTTGAACATGTCCCGTGCTGGTAACCAATACATCCAAAATAATCAACCATGGGTCTTAGCTAAAGGAGATGAAACTCAACGAGCAAGAGCTGGCACTGTTATTGCATTCTCAGCGAACATCTCAGCATTAATATCAATATTAATTCATCCTTACATGCCAGACACCAGTGCAGAAATCCAAAAGCAACTCAATCTATCGGAAGATTGTTTGATAATTCCTGAGGTATTTAGACCAATATTAAAAACTGGTCATCAGATTGGCGTTCCTTCACCCTTGTTTAAAAAGATAGATGATGAACTTGTAGAAACTCTCCAGAAGAGATTCCAAGGAGGCTGTGCTCAGAATACAGCCTCAACAGAAACAGAATCATGTATAGTTGCTGATCCTACTAAAATTGTAGAATTAGAATCACAAATCGTTGCACAAGGAGTTGTCGTCAGGAAAGCAAAGACTAAAAAGTTAAGTAAAGATGTCATTGATGTTGAGGTTAAGAAATTATTAGATTTGAAATCTGCACTTACGAAAGCCCAAGGTGTAGATCCATCTGCTTCTAAGAAAGGGAAGAACAAACCAGCAGTCGAGCCAGCAGCCAATCAAGCTACAAGTCAACCATCTAATGTTGTGATAGATCCTGCTAAGGTTGCTGAATTAGAAACACAGGTTGCAGCTCAGGGAGACATTGTCAGGAAGGTAAAAGCTGATCAATTGAGCAAGGATGTCATAGACACTGAAGTGAAAAGGTTATTAGATTTAAAATTAGCTCTTGCTACTGCTCAAGGTATTGATCCCAACAATGCAGCTAAGAAGGGGAAGAATAAGAAATCTGAACTTAATGTTGATATAATTCTTGTTCAATTATCTGTGAACAAATGGTTCAATATGACAATTGCTATTGGATTTGAAGGAAGTGCTAATAAGCTAGGTATTGGGATCATTAAAGATGGTGTAGTTTTATCAAATCCTCGGCACACATACATTTCTCCTCCTGGACAAGGTTTTCTTCCCAGGGATACTGCCAAACATCACCAGGACTGGGCATTACAAATTCTACAACAAGCACTTGATGAGGCTAATGTAAATCCAGATCAGATTGATTGTGTATGTTTCACAAAAGGCCCAGGAATGGGTGCACCTCTAGTTTCCACTGCTATTGTTGCGCGAACTGTTGCTCAACTATGGAACAAACCATTGGTTGCCGTGAATCATTGCATTGGTCATATTGAAATGGGACGTTTAATAACAGGCGCTCGTAATCCAGTTGTTTTATATGTAAGCGGTGGTAATACTCAAGTTATAGCTTATTCTCAAAAGCGTTATCGGATTTTTGGTGAAACAATTGATATTGCTATTGGTAATTGTTTAGATAGATTTGCACGCATATTAAAACTTTCAAACGATCCAAGTCCAGGTTACAATATAGAACAAATGGCTAAGAAGGGCAAACAGCTTGTTGATCTTCCTTACACTGTGAAGGGAATGGATGTTagtttttcaggaattctatcaTATATAGAAGGCATTGCTAACAAGAAGGTAGACAGTAAAGAATGTACTGCTGAAGACTTATGTTTTTCTTTACAAGAAACTATCTTTTCTATGTTAATTGAAATTAGTGAAAGAGCTATGGCTCATTGCCATTCTAACGAAATTCTTATCGTAGGGGGAGTTGGGTGTAATAAAAGACTCCAAGAAATGATGCACATTATGGCAGAGGAAAGAGGGGCTACCTTGTATGCAACTGATTCAAGATTTTGTATAGACAATGGTGCAATGATTGCCCAAGCTGGATGGGAAATGTTTCGAGCTGGAATAACTACTCCAATCGAGGATACCTGGTGTACCCAAAGATACAGGACAGATGAAGTAGAAATTGTCTGGAGAGAGTAA

Transcript

ANN08192-RA

ATGTCGAGTGTAAAAATTTTCTCCGACGTTGGGAATGTCTTTTCTCTTCGACTCCTTGCATCATGTTATGCTACTGGATGTCGACCGAACGTAGAAATTGTAGATAGTAAAAACTTTAAGTTACACGGATCAAGTGTTCGATTGCCTATCGTCCAAGTAAAACCTGGTCATTATATATTTAGTCACAATGTCGCTACTAGTTATATTTTTGACCAATCCGAAAAGTTTAAATTATCTGATATGGACAAGGCAAAAGTTGACGAGTTAGTCGAATGGGATGGTATTAAATTGCAACCTCCGATGCTTCAGTTTTTATCAGCCCATGTACTAAGTGCTAAAAATGATGCAGCTTCTCACGAGGCCTTGGAAAAGACATTTTCGACCTTAAACTCTTTACTAGAAAAGAAACAATACCTATCAGGGACACATTTAACTGCTGCTGATGCTGCAATATGGGGTAGTTTATACTGTGTTATGCAAATTAAAGATGTTAAAGATTCAGCTAATAACTATCCAGCCCTTGCTTCTTGGTTTCAAAAATTGTGTTCGAATGAAGCATTCTCTAAAGCTGTTGAAGGTGTTACAGGCAACAAAGGTTTATCTGTATTTAAGGGTTCATTAGAATCGTATAATGCATTGCCTCAAATCAAGAAGATTTGCCAATCAAAAAAAGAAAAAAGTGAAAATGAGAAGAATCAATTAAGTGAAGACAACCAGGTTACACCAAAGCAAATTGAGCAGGCGAAAGACGAGTGGGCTAAAGGGCTAAGTGATATTAAACCAAGGATTTACCAGCATCCCATTTTACCTGTCAAAGGAGAGAAAAATATTCTTATTACTTCAGCTTTACCTTACGTTAATAATGTCCCTCATTTGGGAAATATAATTGGTTGTGTTCTCAGTGCTGATGTGTATGCAAGGTATTGCAGACTTCGCAATTATAACTGTTTATATGTTAGTGGTACTGATGAGTATGGAACTGCTACTGAAACAAAAGCTTTAGCTGAAGGTGTTACTCCTCGTGAAATTTGTGACAAATATAACCATTTACACACCAACATCTATAAATGGTTCAATATTGATTTTGATTATTTCGGCAGAACATCAACAGATAAACAAACTGAAATAGCTCAAGACATATTTTGGAAGATTTACAAGAATGGTTATTTCCTTGAAGATAATGTTGAACAACTTCAATGTACAAAATGTAATAAATTTCTTGCTGATCGTTTTGTTGAAGGTATCTGTCCATTATGTTCTTATGAGGATGCACGAGGAGATCAGTGTGATGCTTGTGGTAAGCTTATTAATGCTATTGAACTAATCAAACCTAGGTGTAAGATATGCAGTAGTACACCTGTAGTGAAAACATCCAGACACGTGTTTTTAGATCTACCTAAGATCTCACCTCAGTTAGAGAGTTGGTTAACTAAAAAAGAGGAAGATATGTGGACACATAACGCAAGAACCATAACGAAGGCTTGGGTGGCGGAAGGATTGAAGCCCAGGTGTGTAACTCGTGACTTGAAATGGGGTACTCCAGTTCCTTTAGAAGGTTTTAATGACAAAGTATTTTATGTATGGTTTGATGCACCCATAGGATATATTTCAATCACTGCTAATTATACCAATGAATGGGAGAAATGGTGGAAGAATCCTGATGATGTTACATTAGTTAATTTTATGGCTAAAGACAATGTTCCATTCCATACTGTTGTTTTTCCATCTTCGCTCATCGCAGCGAAAGACAACTACACATTGGTTAATCATCTTAGTGCTACAGAATATTTGAATTATGAAGACAGTAAATTTTCAAAGAGTCGTGGTGTTGGTGTATTTGGTGATCATGCTGAAAGTACTGGAATTCCATCCGATATATTCAGATTTTATTTATTATTTGTACGTCCTGAAACAAATGATAGTGCATTCAAATGGTCAACAATGGCTGGAACAAATAACTCTGAACTTCTCAATAATCTTGGTAATTTCATCAACAGATCATTAATGTTTATGAAGAATGCTTTCAAATCGATAGTTCCTGACATGTCTTTTACTGATGAAGAGTACAAACTAATTGCAAGTATTAACATTGATTTAAAGAATTATGTTGACTATCTTGAGAAATTCAAGATCAGAGATGCTGTTCGTTTTGCTTTGAACATGTCCCGTGCTGGTAACCAATACATCCAAAATAATCAACCATGGGTCTTAGCTAAAGGAGATGAAACTCAACGAGCAAGAGCTGGCACTGTTATTGCATTCTCAGCGAACATCTCAGCATTAATATCAATATTAATTCATCCTTACATGCCAGACACCAGTGCAGAAATCCAAAAGCAACTCAATCTATCGGAAGATTGTTTGATAATTCCTGAGGTATTTAGACCAATATTAAAAACTGGTCATCAGATTGGCGTTCCTTCACCCTTGTTTAAAAAGATAGATGATGAACTTGTAGAAACTCTCCAGAAGAGATTCCAAGGAGGCTGTGCTCAGAATACAGCCTCAACAGAAACAGAATCATGTATAGTTGCTGATCCTACTAAAATTGTAGAATTAGAATCACAAATCGTTGCACAAGGAGTTGTCGTCAGGAAAGCAAAGACTAAAAAGTTAAGTAAAGATGTCATTGATGTTGAGGTTAAGAAATTATTAGATTTGAAATCTGCACTTACGAAAGCCCAAGGTGTAGATCCATCTGCTTCTAAGAAAGGGAAGAACAAACCAGCAGTCGAGCCAGCAGCCAATCAAGCTACAAGTCAACCATCTAATGTTGTGATAGATCCTGCTAAGGTTGCTGAATTAGAAACACAGGTTGCAGCTCAGGGAGACATTGTCAGGAAGGTAAAAGCTGATCAATTGAGCAAGGATGTCATAGACACTGAAGTGAAAAGGTTATTAGATTTAAAATTAGCTCTTGCTACTGCTCAAGGTATTGATCCCAACAATGCAGCTAAGAAGGGGAAGAATAAGAAATCTGAACTTAATGTTGATATAATTCTTGTTCAATTATCTGTGAACAAATGGTTCAATATGACAATTGCTATTGGATTTGAAGGAAGTGCTAATAAGCTAGGTATTGGGATCATTAAAGATGGTGTAGTTTTATCAAATCCTCGGCACACATACATTTCTCCTCCTGGACAAGGTTTTCTTCCCAGGGATACTGCCAAACATCACCAGGACTGGGCATTACAAATTCTACAACAAGCACTTGATGAGGCTAATGTAAATCCAGATCAGATTGATTGTGTATGTTTCACAAAAGGCCCAGGAATGGGTGCACCTCTAGTTTCCACTGCTATTGTTGCGCGAACTGTTGCTCAACTATGGAACAAACCATTGGTTGCCGTGAATCATTGCATTGGTCATATTGAAATGGGACGTTTAATAACAGGCGCTCGTAATCCAGTTGTTTTATATGTAAGCGGTGGTAATACTCAAGTTATAGCTTATTCTCAAAAGCGTTATCGGATTTTTGGTGAAACAATTGATATTGCTATTGGTAATTGTTTAGATAGATTTGCACGCATATTAAAACTTTCAAACGATCCAAGTCCAGGTTACAATATAGAACAAATGGCTAAGAAGGGCAAACAGCTTGTTGATCTTCCTTACACTGTGAAGGGAATGGATGTTAGTTTTTCAGGAATTCTATCATATATAGAAGGCATTGCTAACAAGAAGGTAGACAGTAAAGAATGTACTGCTGAAGACTTATGTTTTTCTTTACAAGAAACTATCTTTTCTATGTTAATTGAAATTAGTGAAAGAGCTATGGCTCATTGCCATTCTAACGAAATTCTTATCGTAGGGGGAGTTGGGTGTAATAAAAGACTCCAAGAAATGATGCACATTATGGCAGAGGAAAGAGGGGCTACCTTGTATGCAACTGATTCAAGATTTTGTATAGACAATGGTGCAATGATTGCCCAAGCTGGATGGGAAATGTTTCGAGCTGGAATAACTACTCCAATCGAGGATACCTGGTGTACCCAAAGATACAGGACAGATGAAGTAGAAATTGTCTGGAGAGAGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6PF21	Methionine--tRNA ligase, cytoplasmic OS=Xenopus laevis OX=8355 GN=mars1 PE=2 SV=1
Q2T9L8	Methionine--tRNA ligase, cytoplasmic OS=Bos taurus OX=9913 GN=MARS1 PE=2 SV=1
P56192	Methionine--tRNA ligase, cytoplasmic OS=Homo sapiens OX=9606 GN=MARS1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002161 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09334 all species →	tRNA-synt_1g	tRNA synthetases class I (M)	Family	Interproscan
PF00043 all species →	GST_C	Glutathione S-transferase, C-terminal domain	Domain	Interproscan
PF19303 all species →	Anticodon_3	Anticodon binding domain of methionyl tRNA ligase	Domain	Interproscan
PF00814 all species →	TsaD	tRNA N6-adenosine threonylcarbamoyltransferase	Family	Interproscan
PF00458 all species →	WHEP-TRS	WHEP-TRS domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015413 all species →	Domain	Methionyl/Leucyl tRNA synthetase	Interproscan
IPR017861 all species →	Family	Kae1/TsaD family	Interproscan
IPR023458 all species →	Family	Methionine-tRNA ligase, type 1	Interproscan
IPR001412 all species →	Conserved_site	Aminoacyl-tRNA synthetase, class I, conserved site	Interproscan
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR009068 all species →	Homologous_superfamily	uS15/NS1, RNA-binding domain superfamily	Interproscan
IPR004046 all species →	Domain	Glutathione S-transferase, C-terminal	Interproscan
IPR017860 all species →	Conserved_site	Peptidase M22, conserved site	Interproscan
IPR029038 all species →	Homologous_superfamily	Methionyl-tRNA synthetase, Zn-domain	Interproscan
IPR041872 all species →	Domain	Methionyl-tRNA synthetase, anticodon-binding domain	Interproscan
IPR014758 all species →	Family	Methionyl-tRNA synthetase	Interproscan
IPR036282 all species →	Homologous_superfamily	Glutathione S-transferase, C-terminal domain superfamily	Interproscan
IPR000905 all species →	Domain	Gcp-like domain	Interproscan
IPR033911 all species →	Domain	Methioninyl-tRNA synthetase core domain	Interproscan
IPR009080 all species →	Homologous_superfamily	Aminoacyl-tRNA synthetase, class Ia, anticodon-binding	Interproscan
IPR000738 all species →	Domain	WHEP-TRS domain	Interproscan
IPR010987 all species →	Domain	Glutathione S-transferase, C-terminal-like	Interproscan
IPR034680 all species →	Family	tRNA N6-adenosine threonylcarbamoyltransferase Kae1, archaeal/eukaryotic	Interproscan
IPR043129 all species →	Homologous_superfamily	ATPase, nucleotide binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45765 all species →	METHIONINE--TRNA LIGASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0004812 all species →	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006418 all species →	Biological Process	tRNA aminoacylation for protein translation	Interproscan
GO:0004825 all species →	Molecular Function	methionine-tRNA ligase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006431 all species →	Biological Process	methionyl-tRNA aminoacylation	Interproscan
GO:0017101 all species →	Cellular Component	aminoacyl-tRNA synthetase multienzyme complex	Interproscan
GO:0000408 all species →	Cellular Component	EKC/KEOPS complex	Interproscan
GO:0002949 all species →	Biological Process	tRNA threonylcarbamoyladenosine modification	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN08192-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.