Gene detail

Detailed information of ANN08346-RA in Leptoseris scabra

Genomic Location: Scaffold_6__1_contigs__length_62720928:31097193...31102519
NR annotation: CAH3174447.1, unnamed protein product, partial [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN08346-RA

ATGAGGTTTTTTGGCGAAGGAGTACTACCCTTGAAGGCATTTTCTCCGGATAGACAGTGCACTGACAGTGGGGAACGTCTAAGCAGCTACGACGGCTTAGAAATATTTTTGGTTTCCAATTCCAGAATCAGAATGGCCTCTGTTGTGCCCAAAAAGGTCAATGAGCACCTGGAATGTGCTGTGTGCATGGAACAATTTCAGGAACCCAAAGTTTTACCATGTCTGCACACTTTCTGCAAAGGATGCTTGGAAAAACTGGTGAAGAAAAAGGAACCCGATTATGTCATTACCTGCCCTGAGTGCCGGCAGGATGCAAAAATTCTTGACGGAGATGTCAGCAAACTGCAACCAAATTTCTGGCTGAATAATTTCATGACCTTACTCAGCATGCAAGACAAGACTATATCTGGGAAGCCATTGCCTTGTGAACACTGTGATAGTGGTGACCCAGTAGTGTCACGTTGCACTGATTGCAGCGTTTTCATGTGTGAATTTTGTGTCACTGTACATAAGAGAATCAATACGTTCAAAGGTCATCAGATTATATCCCTGGCAGAAGTTCAGAAGCTTGGTTCAAAGGCCCTCGTCAAGCCATCATTTTGTGCAAAACACACTGGTGAGACTTTAAAACTGTTTTGTGAAACCTGCCAAGAAACAATATGCCGAGATTGCACCATTGTTGATCATCGTGAACATAAGTACAACTTTGTAGCAGATGTTGCTGAACGAGAGAGGAACGTTGTGCAATCTTCTCTCAACAAAACGAAAGCCAAAGAACGTGCAGTTGTAGAAGGTTTAAAAGCTGTCCAAACAATGAAACAGCGCGTCCAAAGTAAAATGTCAGAAGTAAACAAGGAAGTTGATGTCTTTTTCAACGAGCAAGCCAAGGCATTGGAGTCTTACCGTGCAAACTTAAAGCACGAAGTCACTACACAATGCCAAGTAAGAGTCAGTCAGCTCGAAAAACAATCGGAAATGCTTTCTTCTTTCTTGGCTCAGTTGAGAAGTGGTATGGACTTCACCAATCAGGCAATAGCAGACGGAGATGATGTAAAGCTCTTGTCCTTGAAGAAACAACTTACCGAACGGCTTGCCCAGCTGAACTCGTTTCAGACCCAGCATAAACCCTGCCAAGATGACTATTTGAAGTTACAAGTACATCAGACGATTTGGGCCATAAAGAAAATGGCAACGTTGCGATACCAGCCCATCGACCCTCAGAAGTGCATTGTTAGCTTTGTTGGGGGAGAAGAAGGAGTGATGTACGATAGTTTGGTTGGACAGACCGTTGAGTTGCTGCTTACTAACAGAGATGAAGGGGCAGAGCTTGGGGCACATCAGGTCAATGCTCGAGTCACTTTTGTAACCGGAGGTCATAAAAAAAATCGTCCTCGGGTGGAAGCTCTTCCCGTACTTGACAATGGTGATGGGTCATACACCTTTTCTTATCATCCAGAGTCTACAGGACGTGTAAAATTGTCGGTGATGGTGGAAAGTCAAGACGTACGTGAAAGTCCCTTCACCTGGGGAGTCTATCCATTGCTACCTAGTGTATCAGACAGCAATCGTGGAATGAGAAGAGTCACCACGGGCAGAGCCAGTGGGAGTACAAGGGTGGAAAAAGATGCAGATAGCGAATATGCCTCCGGTTTCAAGAAAGGGAGATATTGTTGGAAACTGCAGTTGGTCAATTTTAGTGCTGAGTCGATGCACCTCCTGAAAATTGGGGCCAACAGTAGCCCACAAAGTTATCCCATAGGTGTTTGTGGCGCACCGCGTGGCAGACGAAATCCGGGAGAATGGTCATGGAGTTATGATGCAGAGGATGTTTATGGAGCACCGCGTGACGGTCGATATCCGGAAGAATGGTCCTTGGATTATGGTGCACCGCCTGTCAGTCAAAATCCGGCAGAATGGTCATGGTGTTATCATGCAGAACCCTTCCGATCAGACGAGCAAGAACCATCTATCACTTCTGTTGAAGAAAAAGATGTGTTTACAGTTTTCCTTAACTTTGAAACAGAGAAACTTATCATCTACAATCAGCGAAGTAAACAAACTGAAATCTTTAACGGGGTTCAAGGATGTGGTCTGTTTCCCATCATTTCGTGTGAGCTTATGGGAAAGGCGTGTTATGGAGGAGTCAATCCAAGCCTCGAAGTTCTGATGTTCTAA

Transcript

ANN08346-RA

Protein

Uniprot

Uniprot term	Description
Q5BIM1	E3 ubiquitin-protein ligase TRIM45 OS=Bos taurus OX=9913 GN=TRIM45 PE=2 SV=1
Q6PFY8	E3 ubiquitin-protein ligase TRIM45 OS=Mus musculus OX=10090 GN=Trim45 PE=1 SV=2
Q9H8W5	E3 ubiquitin-protein ligase TRIM45 OS=Homo sapiens OX=9606 GN=TRIM45 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00630	Filamin	Filamin/ABP280 repeat	Domain	Interproscan
PF00643	zf-B_box	B-box zinc finger	Domain	Interproscan
PF13445	zf-RING_UBOX	RING-type zinc-finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017868	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR000315	Domain	B-box-type zinc finger	Interproscan
IPR027370	Domain	Zinc finger, RING-type, eukaryotic	Interproscan
IPR014756	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR047153	Family	TRIM45/56/19	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001298	Repeat	Filamin/ABP280 repeat	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR043136	Homologous_superfamily	B30.2/SPRY domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR25462	BONUS, ISOFORM C-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan