Detailed information of ANN08427-RA in Leptoseris scabra

Genomic Location: Scaffold_6__1_contigs__length_62720928:31874846...31881510
NR annotation: XP_020615109.1, collagen triple helix repeat-containing protein 1-like [Orbicella faveolata]
Species Leptoseris scabra · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q96CG8Collagen triple helix repeat-containing protein 1 OS=Homo sapiens OX=9606 GN=CTHRC1 PE=1 SV=1
Q9D1D6Collagen triple helix repeat-containing protein 1 OS=Mus musculus OX=10090 GN=Cthrc1 PE=2 SV=2
Q8CG08Collagen triple helix repeat-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Cthrc1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000068 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01391
all species →		CollagenCollagen triple helix repeat (20 copies)RepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR008160
all species →		RepeatCollagen triple helix repeatInterproscan
IPR050392
all species →		FamilyCollagen/C1q domain-containingInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15427
all species →		EMILIN ELASTIN MICROFIBRIL INTERFACE-LOCATED PROTEIN ELASTIN MICROFIBRIL INTERFACERInterproscan

 Gene Ontology
No Gene Ontology signature was detected for ANN08427-RA. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ANN08427-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP