Gene detail

Detailed information of ANN08508-RA in Leptoseris scabra

Genomic Location: Scaffold_6__1_contigs__length_62720928:33441466...33460292
NR annotation: XP_020631211.1, E3 ubiquitin-protein ligase RNF31-like isoform X3 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN08508-RA

ATGGCAAATGATGGCTATTCAAGACAAGGAAACTACTCTCCGGGAAATAATTTCTCCGGTACAGTAGTTGAGTCACTACAAAATGCCCCACCTGCTGGTCCAGAAGCTCCAGATATAGTATGGGGTAGTGATTGGCGTAATGCCGTGGATGGTCCCAATGTATTGCAGGGAGGTCGTGCTCCTGTACCAAGGCCTAGAATGGCAGCATACGGTACAGCTGAGGTCATATCACCAATGCAAAGATCACAAGAACAGTCGAATCAATCTGCTGGGCCGCCTGTGTTTATAACAGTAAGAAGAAGAAGTACTCCTCTGGACAGTGTGGGAGGAACTATAGGCCTTAGTGACGAACAGAAAGAGATTTTTTTGAGAGAAAGACGAGCAGCTCTGGTGCGGGAATACAATAATATAACAGATCCTACCTTGCAGAGACTACTGTCGTTGTGTGCTCCACTCTTAAATATGGATGTGGACATTGAGAGGAAGTATGTAGAGCTTGATTTAAGGAGAGTGTTTGAGGCAAACAAGGAGAAATCCCGGTTCCTCCATCTTACTCAAGGATTGGGTATCTTGGAAAAATATGCTTCTAATCTGATCAAAGAAAGCCGTCCTCCATACTGGCGGACTGTGAAATTTACCAGTTCTCTCGTGCAAGTTCATGTTGGGAGATTGATTGGCAGTCGTGACATTCTGTCACAAATGGGATACACTCAAGACATTGCTGATGGTGTCGCCTTTCCTCATAATGTTACTGAGCCTGATGTAAATAGACTTAGACATCTGGCACCAGACTTGTTCTTTGCTAGATATGAAATTGATGCATTGCTTGTAAACAATCATCCATTCTACGAAATGGACCCACCAGTTCCTCGGGATGAAGTCCAACTTCCAGTACTTTTGCGGACAAATTTTCCCCCATCAAGACCGCAGTGTTTCCCAGCAAGAGCATCTAACCCATCGTCCAGATTACCACAACCTGTTATGGTAACTACAGGAGCAAGTAATACATTGGCATCTCCAGGATACCAACAACCTTCACAGCCACCATCATCTCCAACGCCAGCAGCAAGGAGACAAGGAGGCAGAGAACCCAGCAGCCCACCAGAAGGACAGGGAAGTAGGACTACAGCTCATTCCACTCAAGAGCCACAAGCTGCAACTGAGAGTGAGAGTGAAGAGGACTCAGAATATGAAGATGCTGAGGAAGGCATACTCCCATCAAATGAGAGCGCTCAGGCTCAAACAGGCTTTGAGTGTAAAATATGTGGAGAATTGATAGCAACAAAGTTCTGTAAAGACTGCAAAGATACATTTTGTGCACCGTGCGATGGAGTATACCACAAGCATACCTCTCGACAGCGGCATGTTAGAACTGATCTGGTGGCGCCATCAGCAAGTCCCTCTACAGAGCATCCAGTGTTGGGTACTGCTGTTGCTGCTGCTGCTGCTCCTGCTCCTGCTCCTGCTCCTACTGCTGATGCCAGTGCTTCAAGAATGGAACAACAGTCACACAGAGTAGCTTCTCCCATTGCAGCTACAGCTAGTTCTGGTGAAGAATCAAGACCAAGACCTGTGCCTGCTCCAAGACGAAACAAGACACCACTTCCGTCCCTTCAGGGCATGGCTCAGGGTGCTAAAACACCTGAACCAAAAAATGAAGAGCCGCCACCCCCACTCCCCCCAAGAGTTCCATATAACACCCCTCAGAGACAACAGACCACACCCACCAGGCATCCTCAATCTACACCTGTGGCTGGAACCCAGACTGTAGCCTCACAGCCTGTCATATCAACATCAAGTCAAGCTCAGAGCCAAAGCAGAGAAATTCTAAGGCCACCACCCCTTAATCGTCCTCTTATAACTGGAATTGCTCAGAACAGCACTTTGGGAGCAGATGATGAACGAGATAGTAATGTGATAGTCAAAAGTGCGACTCCACCACCCTTACCACCAAAATCGCCAAGTGCTACTCGAACAAAACTGCCCGTTGAATCAAAGGTTACTAGTCACGGACCTATCAGTCCAGAGAGGGGCTCAGCATTATCTTGCCCTTCCTGCTTTTGCTTAAATTCTGGTGATGCAAAGACATGCCTGTTTTGCAAAAAACCACTTCCTGCCAAGACAAACCAGGAGTCTTCAAATCAGTCTGTGCCAACTCGACAGACTGAATCTGTGGAAACAAGGAACTTCCCTCCACCCCTCTGGGCATTGTCTTCAGATCAAAGGGGAGCTGGCAGACAAATGCAGCAGTCACCAGGAAATGTGAACATCAGTACTTCAACTGGTGCAGGTCAATCGACAGTAGATTCTGACAAGTGGGAGTGTGACTATTGTACTTATCATAACCCAAGGACACGCAGGATTTGTGAGATATGTTGCAAAACAAGCAGAAATGATCCATTACCAATAAAAAACACAGAGGTTCCAGCTCCAAACCCTGGTGCACAACAAGCAACACCCAGGGAAACCCAGCGTGTCATCAATATGGCCATGCAAATGAACAGCCAACAAATGCAAACTACACCTGAGCCACCCAAAAAGGCAGATCCACAGAATGTGCAGGCAGCACCAACAGGGATTCCAACCAGAACAGCAGCAGAACTACCCTTGGGAAATAACTTCCCTGCACAGGTTAACCAACAAGCAAGGATGTGGGAGGGCCCAGCTAGACCAACCCAAGCTAATCCACCAGGACCACCTTTAGCAAATGCCTTTCCTGGAATGGGCAGTCCTGGACAGGCAGGGGTACTGAACACTTCTGGAGTGGTTAATCCAGATTTGCCTGTGAGAGGTCCTTTTCCAGGTGTGGTAGGTTACAGTCCAGGAGGAATGGTTGCTCCAGGAGCCATCCCAGAAGTACCTGCAGTAAGAAATCAGTTTATGAGAGATGCTGGTCTACCTTTTGGTCCACAAGGATTTCCTCCTCCACCACCAATGATGTTGCAACCCATAGGACCAATCAGCCCAGAGATACCACCTGAAGCAGGACCATTTCCTTCTCCGATTGGTAATGCTTTTCTTTGGCAGCATGTTGGTCCAGCTGGCTTCCCTCCGGCACCACCCCAATTTGCTGCCTGGACAGCAGTCCCAGATGAAGCTGTGCGAAGACAGCAAGAAGAGATTTACATAGCTGGTTCACGCTATGTTGAGTGGCTGAGGAAAGCAGAAAAAGAAGGTTTTACTGCAGAGGAGTTGAACATAGCATCTGTACTTGGGATTGACGATCCTCAAGGTCCGATTCATTGGCTGCATACTGCTTGGTATGATTTGATTCACAAAGTTATGGGAGAACTGGCCGTGCCAGAAAACTCACAGGAAATTGGAAATGTCAGTCCAGAGGAGGTTCGGGAAGCTTTGATTGAATGTACAGGGGAAGTGACTCAAGCAACAGCTAAATGCATGGAAATCCGCAAGAAAAAGGTGAGGGAACTACAGCAGACGGGTGTGTATGCCAAAACAGATTGCATTACTGCACTGGATACCTCAGACGGAGATACAGAAAAAGCAATTCTTGCTCTTGAGAAAATGGCAATGCGACCAATGCTTCAAAGAGTACTAAACAGTTGCCTTCCAGATCATGCCACTCAGGAGGAGGTGTTCATGGCATTGACAAGGCAGATAAACACTGAAAGCCAGCAGGAAAAAGCCAACTTTGAGGCCATTGTTACTGACAAAGGCCAAAATTTAGATCGGCGTATTCGAGCAGTTTTGGCCGAGAAAAATGTTTCATCGTGGGGAAGGGCAGAAACTGCTGTCAAGTTGATAGACATGAATTACTCTGTTGAGGACTCTATAGAGGCTGCTCGTGAGTGTGGGGATCTTGCGCGTTCTTTGCGTTATCTCCAACAAGATTGCCCGCTCTGCTTGGAAAAAAAACCTATGAGCCAGATGGTTACATTTCTGCACTGCCAGGATCGTGTGTGCCAGGACTGCGTATCACAATACATCACCATAACAATAAAAGACAAAAATATCCTGCACCTTGTATGCCCAGTTTGTTCAAAGCCAGAAAACCTGGATGATGAAGCAGTAGCAACAGAATACTTCAACCATTTTGATATCATGATCCGCGGTCTGGTCGACCAAGAAACACACGACTTGTTTCAAAGGAAACTTCGAGATAGAACACTTATGAAAGAGCCAAACTTCAGATGGTGCTCACATGTAAGTCTAATTTGTTTGCAGTTGAAGCTCTATTAG

Transcript

ANN08508-RA

Protein

Uniprot

Gene family

Uniprot term	Description
Q8IPJ3	E3 ubiquitin-protein ligase lubel OS=Drosophila melanogaster OX=7227 GN=LUBEL PE=1 SV=2

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity\|RBR

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16678	HOIP-UBA	HOIP UBA domain pair	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000315	Domain	B-box-type zinc finger	Interproscan
IPR036443	Homologous_superfamily	Zinc finger, RanBP2-type superfamily	Interproscan
IPR001876	Domain	Zinc finger, RanBP2-type	Interproscan
IPR026254	Family	E3 ubiquitin-protein ligase RNF31-like	Interproscan
IPR047543	Domain	E3 ubiquitin-protein ligase RNF31-like, Bbox1 zinc finger	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR047541	Domain	E3 ubiquitin-protein ligase RNF31-like, modified RING finger, HC subclass	Interproscan
IPR036339	Homologous_superfamily	PUB-like domain superfamily	Interproscan
IPR032065	Domain	E3 ubiquitin-protein ligase RNF31, UBA-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16004	RING FINGER PROTEIN 31-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0036435	Molecular Function	K48-linked polyubiquitin modification-dependent protein binding	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0070530	Molecular Function	K63-linked polyubiquitin modification-dependent protein binding	Interproscan
GO:0071797	Cellular Component	LUBAC complex	Interproscan
GO:0097039	Biological Process	protein linear polyubiquitination	Interproscan
GO:1990450	Molecular Function	linear polyubiquitin binding	Interproscan