Gene detail

Detailed information of ANN08549-RA in Leptoseris scabra

Genomic Location: Scaffold_6__1_contigs__length_62720928:34089768...34108346
NR annotation: XP_029195950.2, ATP-dependent DNA helicase Q4-like [Acropora millepora]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN08549-RA

ATGATTGGAGCAAAAGCCATGAAGGAGCTTTCAACTCTCAAACGAGAGCTGAAATGCTGGGAAAATATGTTTGAACGAACTCATGGTCGGAAGCCCAACAAGGATGATATTAGTGTCGGACCAGAAGAAATAAGAGAATCGTATCGGAAGTACAGAGAATTGAAAGAATCATTGTCCAAGGTAGAAAAAGAGAGGTGCAAACAGGAGGAGAGTGATGACGTTTTTGGCAAGAACCTAAATAAGAAAAAGGCTGACGAAAGAACATCTTCACTGCCTTTTCGGAAAAAGGATTGGGCTGACATCACACCTGTGAGGTTGTGTCATGGACAGAGGCCAAAGAAAGGGGATGCAGTAGCTAACAAAGAAAGCACTAGTACAGAGAATGATGTTAATGAGAATAATGTTAAAGAAAACACTCCATTTGAAATTGAGGAGAAAGAACAGGCCATAAACATCAGTAGCTATAGTGACTTTCAAGAAGTTAAAGTTATTGACACCTCTGAGCAAACATGTAAATTAACATCTTCTGCCAAGAACAGAATTGGGTCAGGCTTACTGTTTCCTGGTCATCAAGCAAGAAACACCAGAGTGAAGAAAAGAGGAGTGATTTCATCAACTTGGTTGGAGAAATACAAACCTGAATTACCTGATGATGCACGCCATAGTAATGTGTGTTCTGACGATTTGATGGAAAATGAGCCAGAGTCTGATAGCTTTGACACAAATGAACACAACTGCGCTGAGAATAGATTAATTGATGGAAGTAATACTATGTCAACAGCTGGGTCTTGCGAGAGTTCTTGTCTCTCAGTTGAAGAACCAGGGTATGGAATGGAAAGTTGTCAGATTTCAAGTTTCGCAGTGGAAAGGAGTGACACAATGAAATCTCTTGGGGTTAATTCAATGACAAACATTCAGGGAGATAATGAAAAGACAAGTGTTAAGATTAAAGACGTGGTGCCATCAAAATCCCAACGGAGAGAACAAAACAAAAACCTTGACAATGAATATCTAAATGATGACCTTCATCCAAAGGTCACTGATTCATGTCAGGCGTTAAAGATTAGATATACTGTTGTGTCAGATTCTGTCACAATTACCAAACCAATAAATATTTCAAATGAGTTAGTAGGAGGAACAGATTCTATCGATTTTCCTCAAGAGATTGTGAGTAATAAAAGGAAGGCTGAAGGAAGGAGTACAGAATTTGAGAAACCATCCAAGAAGTTCAGAACTGAAAGTGAAAACGAAGAAGAGATGATGTGTGATGTTAGCAAAGTAGAAAATAGTGAAATAGAGAGTGAAGAGGAAATGTCAAAGGCAACTTCTAAAACAGGACATGCAAGCAAAAGTAGTAAAGCAAAGATATCTTCTGGCCTTGTCAGCGACAATTTCCAGAGACTAAACATGAAACACCGCTCATATCGCCGTCGTGGTGGTGGCATAAGTGGCGCTGCACATAAGAGAAGAGCTTGGAAACAGATCATGAAATCACGAGGTGAATTTGTTCCACAGAAAAGCTGGAACAGCAAAGGAAAGGGAGGAGGAGGTGGAGGGAAATCTGGTGCTTGCTTTAAATGTGGAGAGGAAGGTCATTGGGCTAAGAACTGCAGAGGACGTAAAAAACAGAGCAGCATAGCAGAGCAGCGTTTGGTTGACTGTGCATTTCTTAGTAATTATGTTATTGCTCAAAGTGAAAAAGACACAGATGACACTGAGATGGAAGAGTTTGAGCCACTTCCCACCATTGAAGAAGCTGCCATGATGGCTGCGGGTATTCGTCCAGATGATGATTCCCAGCAAGAAAGCGAAGGACTTGTGATTCTCCCACACCAGCTTCCAAGGCCTGTGTACACCCCACCCAGCCCACCACCTGCAATGAATCCTTTGTACCAGCCTGTTGGTGGCAAGCCTGTTGATCCTACAAAAGAAGTGTTGTCTGCTTTAGAGAAGTTAGGATTTTCATCATTTCGTCCAGGACAGCAGGAAGCTGTGATGAGAATTCTCTGTGGTTTGTCATCACTTGTGGTGCTTTCAACCGGAGCTGGAAAGTCTCTTTGCTATCAGCTTCCTGCTTTTCTCTATGCTAAAAGATCGCCATGTTTAACTTTGGTTATATCACCTCTTGTGTCTCTCATGGAAGATCAGATCACTGGTCTTCCTCACGGATTAAAAGGTGCCTGCCTGCACACAAACCTGACAAAGGCCCAGCGTCAGAAGGTCGTGGAGGACCTGTGTTCAGGCAAGGTGTCAGTTCTGCTTCTCTCCCCTGAGGCCCTAGTGGGAGGGGGCTCAGGAAATGGGTGCCTGCCGTCTGTTTCACAGCTACCTCAGATAGCTTTTGCTTGCATTGACGAAGCTCACTGTGTTTCGGAGTGGTCACACAACTTTCGACCTTCTTACCTCAGGGTTTGTAAGGTTCTTCGTGAGAAGTTCGGCGTGCGATGTTTTCTGGGATTGACTGCCACAGCTACACGAGCAACAGCTGCGTCTGTGGCAGAGCATCTTGGGATTGTTCATGATCCAGGCGCTGTTATAAGAGGAGGCGCGGTGCCATCTAACTTGTTTCTGTCGGTGTCATGTGACAGTGATCGAACACAGGCTTTGTTACAGTTACTTCAAGGCCGGCGCTTCTCCCAATGTGATTCAATTATAATCTACTGTACCCGGAGAGAGCAGACGGAGAAACTAGCCTCGACCTTGCGCACGTGCTTACAGGGAACCAGGCTCCCGTCTGGCTGGGACGAGCAGCGTGAGGAGGAGGTGGAGACTGGGAAGAAAAAGAACACAAAGGGAAAAGGCAAGAAGAAGTCAGCCAAAGCGGCCGCTCCCAAGTGGGAGGCGGAGTGTTACCACGCTGGAATGTCCGCCGCCCAGAGGCGCCGTGTTCAGAAACGTTTCATGAAGGGACAGCTACGTGTTGTAGTGGCGACTGTGGCGTTTGGAATGGGTCTTGACAAATCAGATGTGCGAGCTATAATCCATTACAATCTGCCACGGAGTTTTGAAAGCTACGTACAGGAGATTGGACGCGCGGGACGGGACGGGCTTCCCTCGCACTGTCACGTGTTCCTTGACCCAGAAGGTAAGGACATGTGTGAACTCCGTCGCCACGTTTATGCTAACACAGTGGACCGCTCCACTATAAAGAAGTTGGTCCGTCGAACCTTCCCTCGCTGTGAATGTAAGAAACTTCATGAGGAACAAGAACAAAGGAATGCTCACAGAAACACAGAGCGTGAACTGTTGAACTTTGAAGACCCTAGCGGTGACGTGCTGGACTCCAACTTGGAGGCTGAGCTACAAGCTGTTGAGTTGCAGTATCTGAAGGAAGTTGAGACTCAGTCACAGGAGCATAGAGACTCCAAGCAAGACAGCGAGGTAACTAAAGAAAGCTGTGACTCGGCTGTAACGGCTGAGTGTAGTGACGTCCTACAAGATGTCAACTCGGATCAGGGAAAGAAGCTTTGTGATTCAGTAAATGAAGATAAAGAGTCTGTAGAAGCTGAATGTCTTCCTGAGGCTGTTACAGAAAGTAACGATGTGGACTTAGAGGTCAAAGCGCGAGCTTCTGGCCATCACCAACAATCCCTCCAGGCATCAGCTCATCGTCTGTGTGGCGGTCACGAAGTAGCGATGGTGACCGAATCTCTCATTCAGGAACTTGACATGCGCGAAGAGAGCATTGCCACTCTGCTTTGCTACCTCGAGCTGCATCCACGCCGCTGGCTCGAACTACTTCAGCCTGTCAAATCAACTTGTACCGTTAAGTTCTACGGAGGGCATGCGCAGTTAAGAACAGTGGCTCAAAAAATTCCTCCGATCGCAGCTGCGGTTTCGCACACCACCACGACGCCTGCTAGTTTTAAGAAATCCAACACCATCACTTTCTCGGTGGTAGAATTAGCGGATAAGATGGGCTGGGATTTGTCGCCAGTTTGCCGCGAGTTAAGAGCCCTTCAGTGGAACACCTCGCTATCACGTGACCACTCCCTAACTGACATGGGTCAATCCGGGATCTTGGTGGAGTTTTCAGACCTGTCCATGCACCTTAGGGCACCTGGGGACCTCACAGATGAGGAGCGAGATAGCGTGTGTGATTTTCTAGAGGACCGCATCCTGGCTGAGGAGCGAAGCCAGCTGCAGCAACTTCAGTTTGTTTACGATTCGCTCAAGAGTGTTTCGTTCTCTGAGTATTGGCAGTGTGCCGACGATGTAGACGAGGAATCCGATAAACAGCTCAAAGAAATCGTGCGAAGTTATTTCGAAGATTGTAACGACAAGACAAAGGAAGAGTTAGCAGCTTTGACTAAAGCGAGGAAAGGCTCCAAAAAGATTCCTTCCAGTATCACGCGTGATGATCACGTGAATTGGGACGTCATCTCACGTGATATGAGGGCTTTGCAAGGAGTCCACCACGATCACTCGTTCACAGGTCGTGCTATCGCGCGTATATTTCACGGTATTGATAGTCCGTGTTACCCAGCGGAGATCTGGGGACGAGACCGCCGGTTTTGGAGAAAGCATTTAGACGTGGAGTTCAACAGTCTTCGTAAATTTGCCACGCAAGAATTGATCAGATTGAGATGA

Transcript

ANN08549-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O94761	ATP-dependent DNA helicase Q4 OS=Homo sapiens OX=9606 GN=RECQL4 PE=1 SV=2
Q75NR7	ATP-dependent DNA helicase Q4 OS=Mus musculus OX=10090 GN=Recql4 PE=2 SV=2
Q0WVW7	ATP-dependent DNA helicase Q-like 5 OS=Arabidopsis thaliana OX=3702 GN=RECQL5 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004175 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF11719 all species →	Drc1-Sld2	DNA replication and checkpoint protein	Family	Interproscan
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00098 all species →	zf-CCHC	Zinc knuckle	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR036875 all species →	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR021110 all species →	Family	DNA replication/checkpoint protein	Interproscan
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13710 all species →	DNA HELICASE RECQ FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0000724 all species →	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005694 all species →	Cellular Component	chromosome	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006268 all species →	Biological Process	DNA unwinding involved in DNA replication	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0006310 all species →	Biological Process	DNA recombination	Interproscan
GO:0009378 all species →	Molecular Function	four-way junction helicase activity	Interproscan
GO:0032508 all species →	Biological Process	DNA duplex unwinding	Interproscan
GO:0043138 all species →	Molecular Function	3'-5' DNA helicase activity	Interproscan
GO:0006260 all species →	Biological Process	DNA replication	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10730	RECQL4; ATP-dependent DNA helicase Q4	EC:5.6.2.4	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.