Gene detail

Detailed information of ANN08566-RA in Leptoseris scabra

Genomic Location: Scaffold_6__1_contigs__length_62720928:34548756...34558549
NR annotation: XP_020600767.1, uncharacterized protein LOC110039930 isoform X1 [Orbicella faveolata]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN08566-RA

ATGGCTGTTCAGCTCTTTGAAACTTTAGCGTTATCGGTTGTGCTCATGGCGTGGCTTACAGCGTTGGGGAATACGGAATATTATTTCCCTGAGAAAGATACCTACGCTCATGGCAAAAATGACAACGCATCCTTGCCAGCCAGCAATCCGAGCAATTCATGCGTTCCAGCTCACCCCTCTCCTGCATTACCGACGACAGAATGTTACCCATACATGTACAAGGGAAGGGGAATTTGTTCAAGCATACTTGGGGATAGCCTGATTTATGTTTCACACCAAAGGCAAAAGGACATGGAAAAAAACCTGTATAATTTTCAAGTGTTCGAGGCTTACTACCTTTCAAAAGGGGACATTTCTGACAGATGTCTTCAAACTGTGCAGTTAGCCTACTGTAATCACTACTTTCAGAGATGCGACAATACCTCTTCGCGAGTCCGTCCGCGTCCTCTCTGTAGAGAAGCTTGCGAGGTTATGGTTCAACAGCATTGCAAAACTGAGTTCCTTAGGGCTCGCGAATTGAACGAGGCCATCAAAGGAAACAAAGCTATACATGTTACCTACAGAGGGGGCTTTGACTTGATCAATTGCACAAAACTGCCTAGACGAAACGGTGGTACAATTCCCGAATGTTATTTTCCTCGGGAACTTGAAGGAAACAAATCAAGAGAAGACATAAGTGACGTGTGTTTCTATGACGACGGCCAGTCGTATCATGGAAATATCTCCGAGACCCGGTCGGGTTACACGTGCCAGTCTTGGTCTTCCCAGTGTCCTCATCGGCACTACAGAACACCAAACGATTTCCCTGAACTAAAAAACGCTGGCAACGCATGCCGGAACCCTGGTGGTCAGGCCCCTCACGGTCCATGGTGTTATACTACGAATCCTTCGGTGCGATGGGAGTATTGTAACATAACTCTTTGTTCACCAGAAACACTTAAGGATGAAGTCTCTCAATATTCTCTTCTGTTTGGATACTTTTCAGAAGACGCTTATCTGTCAGAATGGAGTCCGTTCAGCTCGTGTTCAGCTTCCTGCGGAGGAGGGTTTAAAATGAGGAATCGCCTCTGTAACGGGGCGCGCTTTGGAGGAAAAAATTGTTCTTCGCTGGGAGCGCTCACTGAAAGAATACCGTGCAGTGATCATAATTGTTCAGGGCCTGTCGACTCATCAGGTGAAACTGGGGTCAACCGTACATTACTTCAAGGACGACGTAAGCCAAATGTCCCGGATGAAGAAGAAATAACGCCATATGCAACAATTCACATCAGCGGCGTTTTCGCGCCAAATGCAGAGCACGATCGCTATCATCTTCCTGGCATGTACGAAAACCCGCTGAAAACCCTGCCTTTCCTGGGAAGGAGAACTTCACGAGAAAGACCCGAACGACAGCTGCGAGACGATCAAAATTCACCGTATGAAAATATCGATCATCTTGGTAGACCATCTGCCAATCCACTGGAATACCTGTTCTTTCAACCTCGCTATGAAAACGAGTCTGTAAATGGAACTTTCGATGTCCTGATAATAAAACCCGGGTACGACAAACTAACGCCTGGCACCAGGCGAAAAAGGCGGGAACATCACGCACCGTTTGGGCGCTCTCCATACGGAGGTGTCGACGAAAGTGGGGTGCCTGTGTACGATTCTGTTATCCGGGAGATAGAAATGAAGTGTAGAGGAGGACAAATCTTATATTACTCTGACAGCGAGAGCGAAGAAAACCGAGATATTGATACAATATTGGAAGTATCCTCCTGTGACGAACGAAGTACGCTAGACAGAACAACGAATGAAAACAACTTTAGGGAGACGGTGAACGAAAGTGAAGAAAGTGATGGCGCGATCTCGTTGGGGGACATTGTTTTGGGTTGTACTGGGATTGACATGAAGACAAATAGGATTCAACCACCATCGTTTTCTTCTTTGAAAAGTGATGGCAAAATGTTCCATGTTTCGCGTTCTCGGGCTGCTCTTCACATGGAAGATCAAACTGGTTTATTCGGGTTTTATAACAGTGACCTCACAAAAGATGCCGAGGCCTGA

Transcript

ANN08566-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8AXY6	Muscle, skeletal receptor tyrosine protein kinase OS=Gallus gallus OX=9031 GN=MUSK PE=2 SV=1
Q16609	Putative apolipoprotein(a)-like protein 2 OS=Homo sapiens OX=9606 GN=LPAL2 PE=5 SV=1
Q7M323	Plasminogen (Fragment) OS=Capra hircus OX=9925 GN=PLG PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0011611 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00051 all species →	Kringle	Kringle domain	Domain	Interproscan
PF01392 all species →	Fz	Fz domain	Domain	Interproscan
PF00090 all species →	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000884 all species →	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR000001 all species →	Domain	Kringle	Interproscan
IPR020067 all species →	Domain	Frizzled domain	Interproscan
IPR038178 all species →	Homologous_superfamily	Kringle superfamily	Interproscan
IPR036383 all species →	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR050759 all species →	Family	Serine proteases and regulators with kringle domains	Interproscan
IPR036790 all species →	Homologous_superfamily	Frizzled cysteine-rich domain superfamily	Interproscan
IPR013806 all species →	Homologous_superfamily	Kringle-like fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24261 all species →	PLASMINOGEN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN08566-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.