Gene detail

Detailed information of ANN08592-RA in Leptoseris scabra

Genomic Location: Scaffold_6__1_contigs__length_62720928:35144051...35147981
NR annotation: XP_015751658.1, PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q767K6	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Sus scrofa OX=9823 GN=DHX16 PE=3 SV=1
O60231	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Homo sapiens OX=9606 GN=DHX16 PE=1 SV=2
Q7YR39	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Pan troglodytes OX=9598 GN=DHX16 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07717	OB_NTP_bind	Oligonucleotide/oligosaccharide-binding (OB)-fold	Domain	Interproscan
PF21010	HA2_C	Helicase associated domain (HA2), ratchet-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011709	Domain	DEAD-box helicase, OB fold	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18934	ATP-DEPENDENT RNA HELICASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0004386	Molecular Function	helicase activity	Interproscan
GO:0005622	Cellular Component	intracellular anatomical structure	Interproscan
GO:0071013	Cellular Component	catalytic step 2 spliceosome	Interproscan