Detailed information of ANN08613-RA in Leptoseris scabra

Genomic Location: Scaffold_6__1_contigs__length_62720928:35454160...35472986
NR annotation: XP_044169062.1, cleavage and polyadenylation specificity factor subunit 2-like [Acropora millepora]
Species abbreviation LSCAB · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q10568Cleavage and polyadenylation specificity factor subunit 2 OS=Bos taurus OX=9913 GN=CPSF2 PE=1 SV=1
Q9P2I0Cleavage and polyadenylation specificity factor subunit 2 OS=Homo sapiens OX=9606 GN=CPSF2 PE=1 SV=2
O35218Cleavage and polyadenylation specificity factor subunit 2 OS=Mus musculus OX=10090 GN=Cpsf2 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004914 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13299
all species →		CPSF100_CCleavage and polyadenylation factor 2 C-terminalFamilyInterproscan
PF16661
all species →		Lactamase_B_6Metallo-beta-lactamase superfamily domainDomainInterproscan
PF10996
all species →		Beta-CaspBeta-Casp domainDomainInterproscan
PF07521
all species →		RMMBLZn-dependent metallo-hydrolase RNA specificity domainMotifInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036866
all species →		Homologous_superfamilyRibonuclease Z/Hydroxyacylglutathione hydrolase-likeInterproscan
IPR027075
all species →		FamilyCleavage and polyadenylation specificity factor subunit 2Interproscan
IPR035639
all species →		DomainCPSF2, metallo-hydrolase domainInterproscan
IPR022712
all species →		DomainBeta-Casp domainInterproscan
IPR025069
all species →		DomainCleavage and polyadenylation specificity factor 2, C-terminalInterproscan
IPR001279
all species →		DomainMetallo-beta-lactamaseInterproscan
IPR011108
all species →		DomainZn-dependent metallo-hydrolase, RNA specificity domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45922
all species →		CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 2Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003723
all species →		Molecular FunctionRNA bindingInterproscan
GO:0005847
all species →		Cellular ComponentmRNA cleavage and polyadenylation specificity factor complexInterproscan
GO:0006378
all species →		Biological Processobsolete mRNA polyadenylationInterproscan
GO:0006398
all species →		Biological ProcessmRNA 3'-end processing by stem-loop binding and cleavageInterproscan
GO:0098789
all species →		Biological Processobsolete pre-mRNA cleavage required for polyadenylationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K14402CPSF2, CFT2; cleavage and polyadenylation specificity factor subunit 2-Messenger RNA biogenesisko03019deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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