Gene detail

Detailed information of ANN08710-RA in Leptoseris scabra

Genomic Location: Scaffold_6__1_contigs__length_62720928:37112857...37120620
NR annotation: XP_020614895.1, eukaryotic translation initiation factor 6-like [Orbicella faveolata]
Species abbreviation LSCAB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6GR45	Eukaryotic translation initiation factor 6 OS=Xenopus laevis OX=8355 GN=eif6 PE=2 SV=1
P56537	Eukaryotic translation initiation factor 6 OS=Homo sapiens OX=9606 GN=EIF6 PE=1 SV=1
O55135	Eukaryotic translation initiation factor 6 OS=Mus musculus OX=10090 GN=Eif6 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008296 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01912 all species →	eIF-6	eIF-6 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002769 all species →	Family	Translation initiation factor IF6	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10784 all species →	EUKARYOTIC TRANSLATION INITIATION FACTOR 6	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000054 all species →	Biological Process	ribosomal subunit export from nucleus	Interproscan
GO:0000460 all species →	Biological Process	maturation of 5.8S rRNA	Interproscan
GO:0000470 all species →	Biological Process	maturation of LSU-rRNA	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0030687 all species →	Cellular Component	preribosome, large subunit precursor	Interproscan
GO:0042256 all species →	Biological Process	cytosolic ribosome assembly	Interproscan
GO:0043022 all species →	Molecular Function	ribosome binding	Interproscan
GO:0043023 all species →	Molecular Function	ribosomal large subunit binding	Interproscan
GO:1902626 all species →	Biological Process	assembly of large subunit precursor of preribosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03264	EIF6; translation initiation factor 6	-	Translation factors	ko03012	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.