Genomic Location: Scaffold_6__1_contigs__length_62720928:38280036...38294981
NR annotation: CAH3015070.1, unnamed protein product [Porites evermanni]
Species Leptoseris scabra · all data for this species · gene families
| CDS |
| ANN08761-RA |
| Transcript |
| ANN08761-RA |
| Protein |
| ANN08761-RA |
| UniProt accession | Description |
|---|---|
| Q92696 | Geranylgeranyl transferase type-2 subunit alpha OS=Homo sapiens OX=9606 GN=RABGGTA PE=1 SV=2 |
| A5A779 | Geranylgeranyl transferase type-2 subunit alpha OS=Sus scrofa OX=9823 GN=RABGGTA PE=2 SV=1 |
| Q5EA80 | Geranylgeranyl transferase type-2 subunit alpha OS=Bos taurus OX=9913 GN=RABGGTA PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003814 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01239 all species → | PPTA | Protein prenyltransferase alpha subunit repeat | Repeat | Interproscan |
| PF07711 all species → | RabGGT_insert | Rab geranylgeranyl transferase alpha-subunit, insert domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR002088 all species → | Repeat | Protein prenyltransferase, alpha subunit | Interproscan |
| IPR036254 all species → | Homologous_superfamily | Rab geranylgeranyltransferase, alpha subunit, insert-domain superfamily | Interproscan |
| IPR001611 all species → | Repeat | Leucine-rich repeat | Interproscan |
| IPR009087 all species → | Domain | Rab geranylgeranyltransferase, alpha subunit, insert-domain | Interproscan |
| IPR032675 all species → | Homologous_superfamily | Leucine-rich repeat domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11129 all species → | PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT/RAB GERANYLGERANYL TRANSFERASE ALPHA SUBUNIT | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0008318 all species → | Molecular Function | protein prenyltransferase activity | Interproscan |
| GO:0018342 all species → | Biological Process | protein prenylation | Interproscan |
| GO:0004663 all species → | Molecular Function | Rab geranylgeranyltransferase activity | Interproscan |
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0005968 all species → | Cellular Component | Rab-protein geranylgeranyltransferase complex | Interproscan |
| GO:0018344 all species → | Biological Process | protein geranylgeranylation | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K14050 | RABGGTA; geranylgeranyl transferase type-2 subunit alpha | EC:2.5.1.60 | Membrane trafficking | ko04131 | deepkoala |
Genes whose expression across the transcriptome samples of Leptoseris scabra tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Leptoseris scabra, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
