Gene detail

Detailed information of ANN08816-RA in Leptoseris scabra

Genomic Location: Scaffold_6__1_contigs__length_62720928:39674467...39686781
NR annotation: KAJ7374595.1, hypothetical protein OS493_004933 [Desmophyllum pertusum]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN08816-RA

ATGGATGATTACAGCATAGCACAGCTTTATAGAAGGATAATCTCCCCCTCCGTCAAGCTGCAAAATGAAGAATGGCAAAAGCAGACACATCTTCGACACAGAAACTTTAAGGGCCAATCACCAATCAGCAGACTCAAGACAGCAAGTCCTGCACACAGTGTGGTGTCTGCTCCTGGACAGTTGGAAGCTAATGACATGTCCCTTCAGCCTTTGAATGAAAACAGTGTATCTGTCATTGAGAAATCTACAACAAGAAGTGAATATGCAGGATACAATTTTCAACCAACTGTGAAGTTCAAGACAACTTCTCTTCCTGCTATGCCGCTGAGCAGAAAATACTCACCCTCCCCCACTGGAACAACAAGATCAGTTCCTGTTTCCTATGGTCACCACATGGGGGTGCCATCAAGATATTGGGCAAATGAGAATCCTAGAATATTGTACAGTAGACAAAGAGACAGACTGATGTCAGAAGAACAAGCGAAGGAACGCTGCCGGAGAATGAAAAGAACATCTGAGATTGTCCATCACAGGGTTGATAAACAGTATTATATGGCAGGGACAAAAATTCCTTTACAAGGGAGGTATGATGTGGACAACACAGATCTGTTGCAGTTAAGACTTCTTGCTCAACAGAAACAACTTTCAGACTACAAGGCTGCCAAAGATGCAAAATTTGCTTCCAGTAATCCTCGAGACAGTCCAAGTGGCCAACTTAGTACTCCTGTGCCAGGCAGTGGTATCAGGGCACCCAGCTCTCAGGCACTTTCGTCTGCTACGGATCTTGAAAGCGCAGATACTGATGGGAAGTGGGCGGAGGAAGACTCGGATGTGAGTTCAGTTGACGAGTTTGACAGCGTGTCAATCAAAGGAAGGCGGGAAGAATTCGAGGCGCGCAAAGCTCTTGCACTCAGCGAGAGAAAACTCCAAGATGGTGACACCACTGAGGGAATATTGAACAAGAGCAGCAAAGAAGAAGCGAATAAAAAGGTGCAGGCTGCGAAAACGAAGGGAAGCAAAGTAAACAAAGAAGCCAAGAAGGGAAGAATACGATTTAAGGAGGAAGGAAATCAGAAGACGGAAAAAGATAGGAAGAAAACGACAAAGAAAGGGCAAGAAGAGGAGGCGAAGAAAGATGATGCAAGTGATACCAGTGAGCCTAAAGAAGAGAAGAGGAATAAATACTTGGATGAATGGCTTGGAATAAAGCGAGAACCAGTAGACACGAGATACCAGCCAGGCAAACCACCGCCAAACAGGATTTTCATGTCAACTAATGTACAAGGCGTGAAGAAGAAGGGAGAGAAGTTTTCCTCTGCATTTTTGACAGAGATTACAGATGGCAAGGAATCTAAAGATGATGAGGAATTTCTGACACCCGATGCGCGTTACGGTATCATCAACGATCAACAAAGACACGTGTTTGGATTGTTGTTCGATGAAGTGGATAAAGACAAAAATGGCAGTGTAACCCTAGAGGAACTCAAACTGAGAATGCAACCCTCCGTTTCCAGACATGATATTAAACATTTTGTTCAGGTATTCGATTTGAACAAAGATAAGACTGTCGATAAGAGAGAGTTTACTGCAATATGTGCCCTCAATGATCGCATTTCTGGAACCAAAACTGAATCTGAAGACGCATCTTTGGCTTTAGATCTGGAAAATTTAGCTCAGCACATTGTCATTTTCAAGGAAATGTTCAAAACAGTCGATGAAGATGACGACAACAGACTGGACGCTGGTGAGCTCCTCGTGATGGTGTCCGCTGCCATGGAAACGGAAATAGGGGCGGACCTGCAGACAGCCAAGGAGGTGCTTGAAGGAGCACGTGATGAGTTCGGGTTTATTGACTTCATTGGTTTCATGTCATACATACCATTCTTTGCCAAGCTGCTAAGAACCATCCTGGATCATCCGCTGACCATTGCTGAACTAGAGCGGGCTCGAGAACGAGTCAGGCAACACGACCTCACCTTTAAGCCGCCCAAGAAAAAGGCCAAGGAACCGAAGAGTTGGGAAGTGTTCTAA

Transcript

ANN08816-RA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006919 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13202 all species →	EF-hand_5	EF hand	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR35538 all species →	LIG_CHAN-GLU_BD DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN08816-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.