Gene detail

Detailed information of ANN08842-RA in Leptoseris scabra

Genomic Location: Scaffold_6__1_contigs__length_62720928:39957547...39979906
NR annotation: XP_029188225.2, uncharacterized protein LOC114955525 [Acropora millepora]
Species abbreviation LSCAB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN08842-RA

ATGCCACAGAAATTTAGCTGTTACCCTCAGGTATATTCTACCCAAGAGGGTACAGGAAAGATTAATGCAACAGCTGAATTAGCTGTTACGCTCAGACTGCATATGGTGAACGTTACGGAATTAGATGATGGAATTATCACGTTTGATGAGTTCAAAACCATGGACACTCGTGGTGCTGATACCATGATGTTCCACGCTAGCAGAACTCATCCAAAGTACAGACCTCGGTACAGTGATCAGACATGGGTGAACCAGCGACAGCTCAAAGATCCTATTTTGGATAGAATCTTAGAGAGAGTCATCAGACTAACCAAATTACCAAGAGAGATCATTTATGGAAGCGAAAGAATCCAGATCGAAGTCGCTTCCGAAGCACGTGATGTGAACATTGGTCTCGAAGAGAATAATTATTGCTTAATGGCCTTGGGCCTCCTATCAACCGTTCTTGGTGTAGATCTGACGTCCCCAGTTAGTCCACAAGCTTATCGAGAACTAATCAAACAAGGATTTGCTACCAACTGGTTCAAAACACCAGAACCGTTGTCGAAGTACCACGCCCAGAATATCGACGACATCTACTCGAAGGGGTTCAGAAATGTCACGCTTCGTTCAAGGGCAGACTTGTACACCGCTCCGTATGACTCTATTGATTTCGCTTGGTTTCTCGCAAATTTGACGGCGGTAGTTAACAAGTGTCTCGACAAAGGTGTGATGCCGATCATCTCCTGGATCCACCATGAAGCTGAAGCATTTGCAACCGAGCAAGACCAGCAGGATTATGTAGCTTGGTGGACTGCAGTAGCGCGCCGTCTGCGAGACAAAAATTATGGTCTCAGTTTTAACCTGTTTACAGAACTGGGAATTGATCGGTGTATAAAAACAGTGTACTCTTGCAACGAGAGCCTCCGCATGAGGCCCGACAAATACAACAATTGGACTTCCCAAGTGGTTAAGGCGATTCGTGAAACTGGAGGCAACAACGCTCAACGTATTCTCATTCTCGGCTCACCAGGGAAAACGGGAAGATTTCTCAAAAGAATCGACGAATCCATTTATGAGAACGACTCGTACATGCTAGCTGACATTGTTGTTTATTATGACAAGAACGGCCATTACAACGCACATTTTGATTCTGAGACTCACGAGATGAGCCACATCCCTTGCTGTCATCAGTTGGAAGAAAAAATGATGCTGAACTATGAAAATCCCTGTAGACTTTGCAGGTACATCACCATATTGTATTATTTGAGTGACGTGGAAGCTGGAGGTGAAACAGCTTTTCCTGTGGCAGACAACGAGACATTAGACTTTGAGTATCTAAAAAGTACCCGTATGGAGTTGGATTACTTTAACCTCAGTCACAACTGCCACATGGGTAATCTAGTGCTCAAACCACGAAAAGGCACAGCGATCATGTGGTACAATCATTTCATGGACGAGAAGAGTGGCTGGTTGGGAGAGATGGATCAGTATAGCTTACACGGAGGGTGTGACATCCTGCAAGGAGAAAAGTGGATCGCGAATAACTGGATAACTGCGCCATATGAAGACAGCGCTCACGTTACAAGTACCTGGCTTGTGCCAACCATGATTCTGTTTAGTCTACTTCTGATTTTCTACCTTCCCAGTTTTATTTTTGACTTGTCTGCTAAATGCGATGAGCAATTTTATACGAACAAACAGAACTATAGCGTCTGTAGGTTTACAAGAGACGGCGAGGATTGCGACTACAAAAAGTTTGATTCGAACGGCGACGAACCTTGCATGATCGGTAGAAAGGCGGGATTGACAAGAATAAACGGCGTAAAGGTTGGTCATGTGGAGGAAGTGGATCTTGGAGATGGGATAAGAAAGCGTATAACAAGAGCTATGAAGCCTCCTGTGTTTGAAATTCCAAATTTTCTCAGTGACGAAGAATGTAATCACATGATTCTCTTGGCGGTAGAAACAGGGCTCTTCTCCAGTATAGCTCGTGGAGGGCTACAGTCTCCAGACGAATTTAAGATTCCTACAATCAGAAACGGTAAGTCAGATGGCCTGGTTGGTTATTTCGAAGGTTTGGATCTAGACGGGAACGAAAAGGTCACCTTAGAAGAGGTGATGGCTTTTGCTAAAAAGTATCACTTTCTGATTCTGACAAAGGAAGAAACATTGGAATTACTTCATAATGCTAACATAACGGAATTTGACGATGGATTTGCTACACGATACGAAGTTGATAGAATGAATTCCCTCGGGCTAAGCGACATGTTCTATGCAACGACCTTGTCACACCCGCTTCACAGAGCGAGGTTAAGTGAACAGACTTGGGTTAATCAGAGAGGCTTAGGAGACCCAGTGTTGGATAAAATTATAGAAAGAGTGGTAGAACTCACAAGGCTTCCTCGAGAAATCATCTACGGTAGCGAGAGATTGCAGGTTGTCGTTTACGGGGAAAATGGCCACTACCACGCCCATTTTGATTCTGAAACTCACAAAAGAACAGACAATGAGTCGTTTTCTTCGAAATGGAATTTGATGAGTTTGCTTACGCACTCTTTTAGATACATGACCATACTTTATTACTTAAATGATGTCGAGGAAGGAGGGGAGACTGCCTTCCCAATAGCAGACAACGCTACCCTTGACATGGAGCACCTCACTACAAGTCGTGGTGATTTCGACTACTACAATCTCAGCCACAACTGCCACAAGGGAAATCTAGTGGTCAGTCCACGGAAAGGGACAGCAATCATGTGGTACAATCACTTGTTAGATGAGGAGAGTGGCTGGCTGGGGCCTATGGATGACTACAGTCTTCACGGTGGATGTGACATACTGAAAGGAGAAAAGTGGATCGCAAATAACTGGATAACTGCACCATACAAGGATAGCGCGCATGTTCCAAGCCAATGGCTTAGAAAATTTGATATATAA

Transcript

ANN08842-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BG58	Transmembrane prolyl 4-hydroxylase OS=Mus musculus OX=10090 GN=P4htm PE=1 SV=1
Q9NXG6	Transmembrane prolyl 4-hydroxylase OS=Homo sapiens OX=9606 GN=P4HTM PE=1 SV=2
Q9LN20	Probable prolyl 4-hydroxylase 3 OS=Arabidopsis thaliana OX=3702 GN=P4H3 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000200 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13640 all species →	2OG-FeII_Oxy_3	2OG-Fe(II) oxygenase superfamily	Domain	Interproscan
PF00150 all species →	Cellulase	Cellulase (glycosyl hydrolase family 5)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005123 all species →	Domain	Oxoglutarate/iron-dependent dioxygenase	Interproscan
IPR044862 all species →	Domain	Prolyl 4-hydroxylase alpha subunit, Fe(2+) 2OG dioxygenase domain	Interproscan
IPR006620 all species →	Domain	Prolyl 4-hydroxylase, alpha subunit	Interproscan
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR045054 all species →	Family	Prolyl 4-hydroxylase	Interproscan
IPR001547 all species →	Domain	Glycoside hydrolase, family 5	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10869 all species →	PROLYL 4-HYDROXYLASE ALPHA SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005506 all species →	Molecular Function	iron ion binding	Interproscan
GO:0016705 all species →	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	Interproscan
GO:0031418 all species →	Molecular Function	L-ascorbic acid binding	Interproscan
GO:0004656 all species →	Molecular Function	procollagen-proline 4-dioxygenase activity	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0018401 all species →	Biological Process	peptidyl-proline hydroxylation to 4-hydroxy-L-proline	Interproscan
GO:0004553 all species →	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0071704 all species →	Biological Process	obsolete organic substance metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN08842-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.