Gene detail

Detailed information of ANN09049-RA in Leptoseris scabra

Genomic Location: Scaffold_6__1_contigs__length_62720928:44464332...44471572
NR annotation: CAH3191829.1, unnamed protein product, partial [Porites evermanni]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN09049-RA

ATGGCCTTCGAGACGTATGTTTCGGCCCTACTGTTTTTAGCCATTCTAGGAAATTTCACTCTGTCCGTTGAAGGATTTAGAGTCTGCGTCAAGGAATTGTATTTGACCAGATATGATCCAGTTTCAGTGAGCTATGCGGTCCTTACAGATATCTGTGACCCTGGATGGACCTATTTCAATGGATTCTGTTACTTTACGAGTGAAAAATGTGCAAACTGGACCACAGCTCTGACAAAATGCAGACGGGAAAACTCTGTCCTTGCTGATGTTAGCAGCGACGAGGAAAATGTTTACATACAGCGCCGCCACAATGGCGAAAAATCCTGGCTGGGTTTGAATGACATCTCCGCGGAGGGGAACTTTACTTGGGCGGATGGTGGAGCGGGAAACTTTACAGCTTGGGCCAAGAATCAGCCGAACAACTTCAAAGATGAAGACTGCGTGCACGCACTTGGTGTGAAATACAACTATGAATGGGATGACGTGAAGTACAGTGATTGTCACATGTTTACTTGCAAGAAAGATCTTAATGAGTGTAAAAGAAACACACACAGCTGCCATGCGTTTGCCGCCTGTACCAGTGAACGAGGATCCTATTCGTGCAAGTGTAACGGTCAATACATTGGAGATGGATTTAAATGTATTGCTAGAATTGACAAATCCTGTTCTGAGGAAAAAAAAAATAAAGGCGGTGTAAGCGGAAGTTACGTCATTGATCCAGATGGCGAGGGAGGTCTGGCACCATTTACAGTGCACTGCGACATGACTGACAAGAATGGAGTTGGTGTGACAGTCATTAGTCACGACAGTGAAAGCAGAACACATGTGAAAGGATATGACAGTCCAGGCAGTTACTCACGTGACATTCATTACACAGGAACGAGTCTGTCTCAGCTGGCGAGTCTCACCCGGGTCTCCTCACACTGTGAGCAGTTTATCAAGTATGAGTGTTATAAATCAAGGATTTTTAAAGATGCGTATCACTATGGCTGGTGGGTTTCACGCGATGCAACTAAGATGACGTACTGGGGCGGAGCCTCTGGCAAGAATAACTGCGCATGCGCGATGACCAACTCATGCGCAGACCCCAGATATGGCTGTAACTGTGATAAGAATGACTATGTATGGCGTGAAGACAGCGGTCTTCTCACTGACAAGACACGTCTCCCAGTTAAACAGCTCAGAGATGCTGCGATAATAAAATTCCAGTTCCCCAGAGTCTCTCCTGGCGACCAACCGCTGGCCAAAGAGCCTGAGGACTCAGGGAACGAGATTGTTTGGGAACAAAATCATGTCACAAAACCAAAACATCTTAATGAGTGCAAAAGAAACGCACACAACTGCCATCAGTTTGCCACCTGTACCAATGAACGGGCATCTTATTCGTGCAAGTGTAACGGTGATTACATTGGAGATGGATTTAAATGCATTCCTACAATTCCCAAATCCTGTTCTGAGGTCAGAAAATACATAAGCGGTGTAAGCGGAATTTACGACATTGATCCAGATGGCAAGTTTGGTCAGAGATCATTTAGAGTGTACTGCGACATGACTGACAAGAATGGAGTTGGCGTGACAGTCATCAGTCACGATAGTGAAAGCAGAACACATGTGTACGGATGTGAACTTCCGGGATGTTACTCACGTAACGTTCATTACGGAAGAACGAGTCTGACTCAGCTGGCGGGTCTCACCAGAGTCTCCTCACACTGTGAACAGTTTATCAAGTACGAGTGTCTTCGTTCGATGTTGTCGTTGAAAGGTCCAGTTGGATGGTGGGTGTCACGCGATGCAACTAAGATGAAGTACTGGGGCGGAGCATCTCGCAGTGGTAAGTGCGCATGCGGGATGACCAACTCATGCGCAGACCCCAGATATGGCTGTAACTGTGATAAGAATGACAACGTACGGCGTGAAGACAGCGGTCTTCTCACTGACAAGACACGTCTTCCAGTTATACAGCTCAGGTTTGGAGATACTGGCGACAACGGCGAATATGGTTTCCACACATTGGGAAAACTGAAATGCTATGGCATAGCATGA

Transcript

ANN09049-RA

Protein

Uniprot

Uniprot term	Description
O54991	Contactin-associated protein 1 OS=Mus musculus OX=10090 GN=Cntnap1 PE=1 SV=2
P97846	Contactin-associated protein 1 OS=Rattus norvegicus OX=10116 GN=Cntnap1 PE=1 SV=1
P78357	Contactin-associated protein 1 OS=Homo sapiens OX=9606 GN=CNTNAP1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12947	EGF_3	EGF domain	Domain	Interproscan
PF00059	Lectin_C	Lectin C-type domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742	Domain	EGF-like domain	Interproscan
IPR024731	Domain	EGF domain	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR001304	Domain	C-type lectin-like	Interproscan
IPR036056	Homologous_superfamily	Fibrinogen-like, C-terminal	Interproscan
IPR016187	Homologous_superfamily	C-type lectin fold	Interproscan
IPR016186	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan
IPR052235	Family	Nephronectin domain-containing protein	Interproscan
IPR002181	Domain	Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain	Interproscan
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24050	PA14 DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan