Gene detail

Detailed information of ANN09132-RA in Leptoseris scabra

Genomic Location: Scaffold_6__1_contigs__length_62720928:45868071...45875687
NR annotation: CAH3172442.1, unnamed protein product, partial [Porites evermanni]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN09132-RA

ATGCGCAAAGTTGAGGCAAACGGCTCTCGTTTGAAGTCCATGAAACAATTTTTGGAGAAACGAAGGTTGGAAGTAAACAACAGCATCGAAGAGGCGACGAGCGAAGTCAAGCGAATCGCTCAACAACGCATTTCATTGCCGATCCAGCAACATGAAGCAAGCGTGACTGAACAGCTACTCGAAAAGAAAGCAGCCTTTAATGATGCGGTTTTAGCTCAGATGGCTAGTTTGGATGACAAAGAGATGGAAATTAGCAACACTATGACATTTTGTGAGGACGTTCTTCTTCGTAATAATTTACCAGAAATTTTAAACGTCAAAGCGATGGTCGAACATAGGCTTCAGGAGCTGGCCGTACCAAATGTTTTCTCATTTATGCCGGAGGTGGATTATCGTGGGATCAAATACGTTCCAAATGATGATTCCTTCCTAAGAGGCGCTCAGGGAAAACTACTTACAACCAACACCGAACCCTCGTTGTCAGTGGCAGAAGGCAGAAATCTTACTGAGAGCTTTATGGGCGACAATTGCACTTTTACAGTGATTACAAAGAATTCAATGGGCCAGACGACTCACAGTGAGATGGATGAAATCGAGGTTAACATCACATCACTTTCTAAACAAACTGACATTAAGACCGCGATGACGAGCTTGAAGGATGGACGTTATTTGATTTCTTACAGACCAAAAACTCTTGGAGAATTTAACGTGTCCATCAAAGTCGGAGGGACCTCGATCAAGGGGAGTCCATTTCAACTGAAAGTCGCTACGAAAGGAAGAAAACCCAAATCCGATGAAAGCAAGCCAACAGGGTCAGATCTCTCAAGAGGGAATAGGGATAACAACAGAGTCCAACCATTGATCAAAGGGAAAGTAAAATTGTCTCTTTACAAGGGAGACATAACCACTGAAAAAGTTGATGTCATTGTAAATGCTGCTAACGTGGACCTCCAACACGTTGAAGGTGTATCCAAGGCCATTCTTGAAAAGGGGGGGAAAACGATCGAGGACGAGTCTCGGCGGATCATAAGAGAGCGAGGGCCGCTCAGAGATGGAGACGCAGTTATCACAAAGTCAGGAAAACTGTCTTGTAAAGTGGTTGTCCATGCTGTTGGACCAATTTGGAATGCCGTGGAAGCAAAGAAAAGCAAACAAATTCTTCGTCGTGCCTATCTCAACAGCCTTTTCGAAACAAGCAAACTGAAAATGACTTCGATAGCATTACCAGCTATTGGTTCCGGCATTTATGGAATACCGAAAAACGTTTGCGCTCAAGTCATGTTTGATGCTGTAGACGAGTTTGTTAGACAAGGTGACCCAAAAAGCAAAACAGTCACTGATATTAGGATCGTGGACATAGATGACCCCACAGTGAAAGCTTTTGCAAAGGAGTTCATAACCAGATATGGAGATAACCAAGAAAGGAGAACACCAGGACAGGGTTCCGCTACTTTGTCATCAGCTGGAACCGAGGGTGGAAGCTCTAAAGCACCGAATTCAAGGTCAAGACGTGGTAAAAACAAAAACAGAAATGTGCCAGACAGTGGTCGTCCAACAGCGAACCCACACGAACCCGCAAGGGAAGGCCAACATTATTGCACTTCAAGTTCAGCTACCGATAACGACCATCCTTTGAGTGCATCTTTCCCACCTTCTACATCGTACAGCAGCGCTGTTAAGGGTGGTAAGGGTGCTAACGATGGAAAGTCGTCCAAAGGCGCTGGTGGAGGCAAGTCAGAAGAGAAGGAGGAAGAAAACTGTCCTATTTGTCTTGATACTATGACCAATCCACGAGCTTTAAAGTGTAAGCACTCGTTCTGTTCCGTCTGTCTGCAAACAGCCTTAGCAGCAAGCAACAAGTGTCCAGTATGTCAAGAACCACAGGGTGCTCTTCAGGGAAACCAGCCAAGGGGAGAGATGACTTTTCGTTATGACCGATACAGTGTCCCTGGTTATGAAGGCTATGGCACAATCGTCATCAGTTATCACTTTCCATCGGGAGTTCAAGGCCGCGAGCACCCAAATCCTGGGCAGAGGTATGAAGGTACCTCACGCATTGCTTATCTTCCGAATACGCTTGAAGGACGAGAGGTGCTGCAGCTTCTTAGGAGAGCCTTTGACGCTCGATTGGTGTTTACTGTTGGTACTTCAACTACAACTGGTCGTTCAAATCAGACTACGTGGAATGATATTCATCACAAGACTAGCATCAGTGGCGGCCCTTATGGATTTGGATATCCCGACCAAGACTACCTGCAGCGAGTCAAAGAAGAGCTGGCTGCTAAAGGAATCCGTTGA

Transcript

ANN09132-RA

Protein

Uniprot

Gene family

Uniprot term	Description
Q8N9I9	Probable E3 ubiquitin-protein ligase DTX3 OS=Homo sapiens OX=9606 GN=DTX3 PE=1 SV=2
Q5REG4	Probable E3 ubiquitin-protein ligase DTX3 OS=Pongo abelii OX=9601 GN=DTX3 PE=2 SV=1
Q80V91	Probable E3 ubiquitin-protein ligase DTX3 OS=Mus musculus OX=10090 GN=Dtx3 PE=1 SV=2

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|RING

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00630	Filamin	Filamin/ABP280 repeat	Domain	Interproscan
PF01661	Macro	Macro domain	Domain	Interproscan
PF18102	DTC	Deltex C-terminal domain	Domain	Interproscan
PF13923	zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017868	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR002589	Domain	Macro domain	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR039396	Domain	Deltex, C-terminal	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR014756	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR043472	Homologous_superfamily	Macro domain-like	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR001298	Repeat	Filamin/ABP280 repeat	Interproscan
IPR039398	Family	Deltex family	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR039399	Homologous_superfamily	Deltex, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12622	DELTEX-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005654	Cellular Component	nucleoplasm	Interproscan
GO:0007219	Biological Process	Notch signaling pathway	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06058	DTX; deltex	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala