Gene detail

Detailed information of ANN09136-RA in Leptoseris scabra

Genomic Location: Scaffold_6__1_contigs__length_62720928:45936287...45948919
NR annotation: CAH3190271.1, unnamed protein product [Porites evermanni]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN09136-RA

ATGACCAGTTTGTTAGACAAGATTGTGTCATATGGTCCCAAAAGGAAGGTTCTTAACAAAGACCTAGCGGAGCGGAGTGTAGTAGTACAGAATATTCCACCAAACGCTGCAGCCGATAGCATTGTTATTCATTTTCAACGGCAAAAGAATGGCGGTGGAGAGATCGATCACGTACACATTCCTGAGAAGGGAACAGCTGTCATCACTTTTGAAAGCAGTGAAGTCGCGGGGAGAGTCCTGGAACATTCTCAAACACTTGAAGGATCAGATTTAAAACTTGACAGGTTCATTCCAGAAGAGTCCCCTGAGGTTTTTCAGCAAGTAGAGGCACGCGTGAGCTTTGATAAATTCCACATACCACCTCAAGAATATCAGAAGTTTCTCGAAATTCTTAAGGAAAACACGGAAGTGGTATGTCGTAAGGGATCCAAGAATTTCATTCTGTCTGGAAAGTTCAGCCAGATTGAATATGCAAACAAACTTCTTCAGTACCTCATTAAGCTGAAAGGAGGGAATGAAGCCATTCATCATGGTGGTGATACCGATCAGACCCACCGAGGCTCCTCCAGTGGCTCAGATGAACTAGGCAGCGAACCTTCCTCCATCGCCGAATCCAGCAGCTTCGAAGTTCAACCGCAGTTCATGAAATTACTGAAACAGGTCTACGAAGGGGACCTTCAAAAAATAGAAGAAAAGTTTGCTGTGAAGATTGTTTGCGATGAAAATGCGTCTGAAGTATGCATTTCTTCCAGAAAAATGCCAAAAGGCCAAAACCGCTTCCCAGAAGGTTGCGAAGCATTCATTGACCTCTACCAGAAATTTCATCCGAAGATAAGACGTGAGGTAGTTGAACTCCCGAATGAAGCCAGTGAAAGACGTATTCGCGAGGCGATTAGCTTTGTCGAGACTAATAATCCTGCGATCGTTGAAAAAGTAGAGAACAGCTTAGTGGTTTACGCAGAGAAAGATGACATTAGCAGCTCAGTACATGCTTTAAAGCAGACGCTTGGTTTAAGGGAAGACAGCAGTAGCAGAAAGACCAGACGGGGTCAAGGAAATGAGAACCGTGATACTCGTGAGTACTTCGAAACGCAACCCCTAGGTTTCAACTTGCCACAGCGTCTAGATCAAGTCCTAAACAACGGAGTGGTGCTCTCATTATACCAGGGAGACATAACTGAAGAGCGAGTGGACGCCATTGTCAATGCAGCCAATGAAAACCTTCAACACGGTGCTGGCGTGGCGGGTGCCATAGTACGGAAAGGAGGCCATAAGATACAAAATGAGTCCAACCGATTAACAAAAAAGTACGGACAGCTTGATGTCGGTAAAGTTGCTTATACCAGTGGAGGTTTTCTTCCATGTCGTTTCGTGATTCACGCAGTTGGTCCCAGATGGGGGGCACATGGGAGAGAGCAAAGTATACTCCTCCTTCGTCAAGCTTGTGTGCAAAGTCTCAGGTTGGCAGTGCGGTTAGAGCTTTCTTCGATTGCTCTTACGGCAATTAGTTCTGGTATTTTTGGCATGCCGAAAGACATCTGTGCTCAAGTCATGTTCAAAGCGGTGGAGGAGTTTAGCGCAAGTGATGACGCCGAATTTAGCACTCTCCGTGATGTGCGCATAGTCATCATTGATGATCCAACCATCAGCGTCTTCCAAGAAGAATTTGTGAAACGCTACCTTTCCAAAGAGGCATCACCACGAACGGTGACCAACCAGCAACGTCCATCTCATGAGGAAACAGAAACTTCCCCTGCCATAATTTCGGAACAAGATCCACAGAAATTCAGTGGAGATAGTTCAGCTGATTCAATGGGTCGAACACAGACTGAAGATAACAAGTCATCCGATGCAAAGTCCGAGCATGACGACGAGTTTGAGTCACCAAGAGAACAAACTGCACAAGACGAAGATAACAACGATCAAAGTGACGTATTCGACAGTATCAGAGAAAGGCCACTTTCCAACCAAGGTACTGAAGATACCAACAGAGCCATACCCTCCAGTGTTAAAAGTCCAGAAACAGAACAGGAAGGAGTCGATAGCGAACCAAAGGACGATAATTCTGCTTCAGGTGAAAACTCACATAAGGATAACGAACGTACTCATTCTAAGTCTCCATCTAGTAGAGGGAGAGGTAATTTTGCTCCTACATTTCCTGGAAGAGGCAAGTCAACGCCAAATGGAAGCTTCCATTTTCAAGAACAGAATGTCGATGCTGTGAGAGGAAGAGGTATCACTTCCAAAACTGCAACTACCACATCCTCACCACCTGGTCTTACCGTTACGGACGAGGGAAAACACCTTGCACGAAATCTCTGTAATCGTGTGAAAGAGGATCCAAAGACTAATGGCGGCGAGTCATTTGAATTCAAGAAAGAGACAGAGATAGCTAAATCCAAGACGAATTCTTTGCCGGAAGGCAGCCAATCCCAAGGATCTGAAAGTCAAAAACAGAATATTGACAAAGTAGACGCCACTGACGAATCCGAAGAAAGAAGTCCAAAAGAACAGAAACCAGCAGTTCAGTCAAATGCAAACCAGGGGAACGCCACTGGAGACGCTTTCCCATCTGGAAAAAATATTGCAGACATGGGGAAAATCATAGAGGAATCACCTGAGAGATCTGAAGCTGAAGAGGATATGAAACTCTCGACCGCTGAAAAGGCAACGAACGTCAAACCTCCACACGATCAATCCGCAAAGGAACACACACACATTTACGAGGACGTAAAGGGTGTATCAGACCCCGATTGTGACGCGACGTCACATGATCCAGTAATCTCCCAGACCACGGGGAAAGAAATGGAGGCAGTGATCGAAGGTTCAGCTAAAGGTGATCAGTCACTTTCGCGCGGCCCCAATCCTTCGTCCGATCTCCAAGCCTGTCCACAAGCCTTCAATGAAGTAAATAAAGACGCTGTGGGAGAAAGCAGAGATGCCCAGGGAAGTCCCAATGGAGAGTCTGGCACAGGTCCATTAACACTTGAGATGTACAGCACTGGTGAAATGAGCGAACCAAAATGTTTGATGTGCATGAATTTAAGCAAGCATCCTGTTCAACCATCGCAATGTGAACGGGGCCATTACTATTGCAAGACCTGCATAACGCACCTTCTTGAGAAGACGAATATATGTCCACAGTGCGAGAAGGAGGGCCCTCTCAAAAGAAACCAGCCCACTGGTTTTATGACCTGGACTACGGAGACACAGCGTTCACTTCCTGGATACCAGGATTGTGGAATCATTATCGTCTATTACAGTTTAGGCAAAGGGACGCAAGGTCCAGAACATCCCAATCCCGGACAGCCTCACAGTGGCCTGCAATTCTATGCCTTCCTCCCTTACAACAAAGATGGAAAAGAGGTATGCGATCTCTTAAAGATGGCGTTTGATACAAGAATGCTTTTTACAATTGGAACTTCACCCGCTACTAAAGAGGAGAATGTGATCGTGTGCAATGGCATCGAACTGAAGACCAGTGAAAGTGGAGGCCCAGCTAACTGTGGCTATCCAGACCCCAGCTACCTTGATCGGGTGAAGAGTCAGCTAGCAGAAAAGGGAATAACACAGCTTCATTCGTCAAGGATGTCTACCGGAGATTACTCTTACGTGAAGAAACATTTTTAA

Transcript

ANN09136-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8TDB6	E3 ubiquitin-protein ligase DTX3L OS=Homo sapiens OX=9606 GN=DTX3L PE=1 SV=1
Q4J9D2	Uncharacterized protein Saci_1252 OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) OX=330779 GN=Saci_1252 PE=4 SV=1
Q97UU4	Uncharacterized protein SSO2899 OS=Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) OX=273057 GN=SSO2899 PE=4 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000869 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01661 all species →	Macro	Macro domain	Domain	Interproscan
PF21718 all species →	DTX3L_KH-like	DTX3L, KH-like domain	Domain	Interproscan
PF18102 all species →	DTC	Deltex C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039399 all species →	Homologous_superfamily	Deltex, C-terminal domain superfamily	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR039396 all species →	Domain	Deltex, C-terminal	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR002589 all species →	Domain	Macro domain	Interproscan
IPR052056 all species →	Family	Mono-ADP-ribosyltransferase ARTD/PARP	Interproscan
IPR048409 all species →	Domain	DTX3L, KH-like domain	Interproscan
IPR043472 all species →	Homologous_superfamily	Macro domain-like	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14453 all species →	PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003714 all species →	Molecular Function	transcription corepressor activity	Interproscan
GO:0003950 all species →	Molecular Function	NAD+-protein poly-ADP-ribosyltransferase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0010629 all species →	Biological Process	negative regulation of gene expression	Interproscan
GO:0070212 all species →	Biological Process	protein poly-ADP-ribosylation	Interproscan
GO:0140289 all species →	Biological Process	obsolete protein mono-ADP-ribosylation	Interproscan
GO:1990404 all species →	Molecular Function	NAD+-protein ADP-ribosyltransferase activity	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN09136-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.