Gene detail

Detailed information of ANN09169-RA in Leptoseris scabra

Genomic Location: Scaffold_6__1_contigs__length_62720928:46905877...46940170
NR annotation: RMX40561.1, hypothetical protein pdam_00022778 [Pocillopora damicornis]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN09169-RA

ATGGCGGTACCCGAGGTTGTCGAACCCGTTCTGTTGTTTTGTGACACATTTACCCATCCAGAAAATGAGGAAATGCATCTCGACTTGGTGAGTTTTCCAAGACCAGTTTGTATTCAGGAAGTGAGAGTGATACCTGCAGGACACAGGGTTCATGCCGCAGTCAGTGAGAGAGAAAAAATGGGGGAAACTCATCCACCCTCTTTTAAACTGGACTTGTTCATTCGAAATCTTGACCGACCATCTGATGTAGTGTTTGAAAGACTTGGACAGCTTGAGTACAAGGAACCAAACAACTTTCAACTGGTTACATATTCCAAGGGTGCAACTGATGTTGTTGTTCTGCGTGGGTGGTATAACAGAATCACCATCAGCCTGTATGGTTTGTTTACTGATGTCAATCAGCGTCCTCAAGAACCACGCCCAGAGCCAAGGGCTGAGAGGCCACCAGTGATAGTTGAAAGCAGGGCCCCTGAGAGAGACCTTGAAAGAATGGACAGAGAAGTGGAAAAGGTACCCTCTGAAAGAGTCCCTGAGAGGGCTGAAAGAGCTCTTGAGCGAGGCCTAGAAAGACCTACAAGAAGGGAGAGGAGTGCAGATAGAGGCCCTCCTGATTTAGGTCCAGGAGAGAGGGGTACAGATGAAAGGGGCTCTGAGAGATCTACAGAAGTGAGGGACAGACATGAAGGACAAATGGCACCAAGGGATGAAAGAAGAGGTGCAAGGGAGAAAGAGAGAACTCCATTGAAGTCGCCACCACGGGTAAAGTCACCGTCAAGGTCACCCTTGACTGTTACAGCTACTGTTGGTGAGAGTACTGCTGCTAAGCCAACAACACCACCTGGGTCACCTAGAGAGGAGCAACCTGCTGGTGAGGAGTCTGGTAATCAGTCAGCTGATGACTTGTTTGAGCCGCTCACACCTGACAGATCGCCGTCAAACTTGTTTATGTCTGATGAAGAAGAAGCCGAGGAAGCAGATGGTTATGAAGAAATTCTCAGTGATGAAGAGGATATGGATGATGGAACTTTGGAGGATGCTGATGTGCAGTTTGGAGATTTGGAAGTTTACAGTGAAGATGCATGGATGTCAGTATCTGTCAGTTTCAACCCTTATCAGTGTGACCTATCACCACTAACTGCATTTACTCCTCCTGATTGCACAGAACATGAAAAGGCAGTATTAAAAGCAACAGAGGATTCCAATTTGATAGATGACCAACAAGCAAATTTTGGACAGGCACTGTTTGAACAAGTAGAGTTGTGTTGCACTTCTGAGAGGAATTTAAAGTGGATTGAGCTGCTTGAGGAAATCCCCAAACTTCTCGTCCCAGGATTGGCATATCTTACAAGAAATGAACAAAAAGAAGGAGTGATGAAAAAGCTGATTGAGTGGGTCATGTATTCACTGGACATTGAGATGGCACAGAAACTTCCTATAGCAGCTAATATAAGGTTGATCAAAGCAGGACTCAAGCTTGTTGGTGCCATGTGTTCTTGCGGCTCTGGTGTTGCTTCGGTCCTTATTGATGCAGGTGTCCAAGAAGCTCTTGGTAAGCTTCTCACTACGGAGCACATGTCATCTTCAATGAAACTACTGACTCTCCAAGCTATTGACAACACCACAGATTGTTACGTTGGAATGGAACACTTTCTTGGATGGGATGCAGGTGACAAGGGAAAGGAAGGTGGAGGAGATGGTGTCAAAGAGGAATCCAAAAGTTACCAACAACTTGTGGACTTTCTTCTAGCAGATCAGACTGTACGTGTGGTGGAAGCTGCCTCGGCCCTAGCTCGCAAAGTTCATTTGTATGAATTGCTAGCTCTTCTTCAGAAAACTGTTGACAAAATTGTTGAAACCACACCCAGCCCAAGGCACACAGAAGCTGAAGCAGATTTAGCAGGTGAAGGGACGGACACCAAGGAGACGGCTGATGTGATGTCACCTGAAAATGATGTTGCCATGGATACAGCAGGGGTGATCGCCGGTGAACGAGATCAAGCTATTGACACTGAGAATATAGAGATTATCGCCAGTGCCCTTGAGGAGATATGTACATTCCTAAATCAGGCAAAACATTTGATTGTACAGTCTCCTGTGAAAGCATTCCCCACTTCTGCTAAGATCACTGGATTTGACACTGATCCAAAGGACCCTTACCCTGTAATGTTCCATTTCTTCAAGGCTAGGCGCCTGCTGGAGTTGATTCTGGTTGTGATGTCTTCCTCGGCTGGTGGTTATCCCGCAGTTTTTGCTCCTATCAGAGACCTGTTCTTCTTCTTGTTACAGTCACAAAACGGCTTACTGTTTCTATCAGAACATCCTGACACAATCAATGGTCTGATTCGTGTCCTCACTCAAACAACTGAAGCAGACATTCACCACAGCGAGGCACCACCATTGAATGAAATCCTAAGAGACAGTACCGTAGCAGATTCATGCACTCCACAGCAACTTGGACTTCTGTTGATTTATCATTTACAGACTCTCCAGGCAGTAGATCAGCTGTTAACTTCTGTTTCTCCTGGTTTGTTGCCCAATGACTTGGATGGTGCAGACATACTCTCCACTTTACATACTCTGTACTCCATGACTTTCACTGTCATTGGTAAAGCTGCAGTGGTTTCTGTGCTCAGTCTGGACACCAATCTTAGATGTCTGCTTCCTTTTGTGGAATCCACAGGAAATGCAGAAGATGACGCCAAACTAAAGAAGTGTGTTTCTACCAGATATGCTACAGTGTTGATTCTGTTAACAGTGAAATTGTCTGAAAATGTAGAAATGTTATCCAAACTGGCTCCCAGACTCCTAGCTGTCACAGCAAGAGGTGATGCAGATACCTCTATCATAGAGCTGGGTCACTGGTTGGTTGCATTGAAGGACGACATCACCTTTGACATGTCAAGCATCACCAGATTAGTGGAATTTGTAAAAAGTCATCTGGATGAGGTGAATACCACGCCCAGTGTAGCTTGTGGAGTGCTGATGGCGCTAAGGGTTCTCAGACATCTTGGCTGTGTGGCTGAAGATTCAAGCACTACCGAAGTGGTTCAGAAAGATCTTAACCAAAACTTAGCTTGCATTGAGCTGTTCTCTGCAAATGCTATGGACGTCTTCATCACCACATTTCAGAAACTCGGAGAATTCCTTCTTCGACCCTGGAGACAGGGGCAGCCGCTGCACACGGGACCACCCCTGATCATGGTTTCCATGGTAACACCTCTCCTGGCGCTGGTGAAGACACTTTTGACCGAACTTCTTAGCAGTGGCAAATACCAGTTTAAGGATACGAGGCTGATGAAGTCGCTGATGATACTACACACAGTTATGTGTACTGCGCCTATGACGGGTCAGCTTAGCAGCCTTGCTCATAAGATCCAGAGTGAAATTGTCAGTGTTTTTATGACGTTTACAAGGCCAGTTGTCCAGTCAGCTGATCACGAGGAAGCAATAAATGAGAGTATTTGGTCCTTGATGTTAAAGGAACTTCTTGAATACACGACATCTGCCCCTCAAGCCTTTTTAGGTGGACTTGTTCTGCTGTCAGAACTGTTACCAATACCTTTGCCTATTCGCTCGTTAGAGGACATGCCTCAGGAAGAAGCAAACCAGGTGATGAATCACAGACGGCTTTGGAGCGCACACCTGAATCCACTCAGCACTGAGTTACAGGGAATACTAAAGGATCTAGCAGGGTCAGCGTGCCACAATCTTCAGCAAGTTTTGAGAAGAGTTTGCTCTCAGCTGTCCGACCTGTCTGCACCCACAGCCTTTAATATCGTCAGGACCCTTTTGGAAACTCTGGACAGCGAGATGGGAAAATCAAATACTGATGATAATAGCTGTACCGCAGGTGGTGTTCGTATCATGACCTTGTTGGCTTATTTGTCATCCCAACCAGCCGTGAAAGTCTCCCTTCTTCAGCTTTTAAAGACTAGTGGAAATGCTAAGAACGACGATCTACTGTTCCCCAATCTTCTGCCGTCAATGTTGTCATGTTTGAAGGGAGACTCGGAGAATCAGACAGTGTCCAGATCACAGTACTGTGTTGTGTCAATCGTTCAGTCCTTGTGTGATCCTACTGTGAGCTTGATACCATTTGAAACTCCTTTTACCGAGCAGCATTTGGCGAATACTTTACCAGACAAGGAGATGTTAGAAGTGATCTGTGCTGCCCTGCTGGAACATATGGGATCAGAGAAACAGTCCTTTGCCACCATTCTGCTGGCTTTGAGAACCCTACTGACCCTGACAGAACACAACTATGGTGTCTATCACCAGAAAATAGCTTTGGAGAACAACAGCGAAGTGTTCTATCGACTCCTCAAAAGACTTTCCTCCTCTTTTGAGTAA

Transcript

ANN09169-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A2AIV2	Protein virilizer homolog OS=Mus musculus OX=10090 GN=Virma PE=1 SV=1
Q69YN4	Protein virilizer homolog OS=Homo sapiens OX=9606 GN=VIRMA PE=1 SV=2
Q9W1R5	Protein virilizer OS=Drosophila melanogaster OX=7227 GN=vir PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002872 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15912 all species →	VIR_N	Virilizer, N-terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026736 all species →	Family	Protein virilizer	Interproscan
IPR031801 all species →	Domain	Virilizer, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23185 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0036396 all species →	Cellular Component	RNA N6-methyladenosine methyltransferase complex	Interproscan
GO:0080009 all species →	Biological Process	obsolete mRNA methylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17545	ULK4; serine/threonine-protein kinase ULK4	EC:2.7.11.1	Protein kinases	ko01001	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.