Gene detail

Detailed information of ANN09279-RA in Leptoseris scabra

Genomic Location: Scaffold_6__1_contigs__length_62720928:49277417...49300308
NR annotation: XP_029179720.2, uncharacterized protein LOC114947217 [Acropora millepora]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN09279-RA

ATGCCAAATGTTGACAGTGTGCTGCGTAAAATAGGGAAGTGGAAGTTCATTGTTATCACTGATTTGCTGAAGTCTTTCTATCAGATTCCCCTGGCCAATTCATCTATGAAATACTGTGGTGTTGCGACACCATTTAAAGGCATCCGCGTTTACACTCGTTCTGCCATGGGAATGCCCGGGTCCGAAACTTGTCTTGAAGAACTGATGTCCCGAGTTCTGGGAGACCTCATCCAAGAGGGCTGTGTTGCCAAAATCGCTGACGACCTCTATGTTGGGGGAAACAGCCCCATTGAAGTGCTTGACAATTGGAGGAGAGTTCTTGCCTTACTCCAAAAGAACAATCTTCGCTTATCCGCAGCCAAAACTATCATCTGCCCAAGAAAGGCCATCGTACTGGGCTGGGTGTGGTCTAATGGCACTCTGCAAGCTAGCCCCCACAAATTGGCCGCACTATCCTCGGTCAAGCCTCCCTCAACAGTGCAAGGCCTCCGCTCCTTTGTTGGTGCCTACAAAGTTCTAAGCCGTGTGCTTCCAAGATTTGCGGAGTTGCTTGATCCCTTGGACCAAGCCACTGCAGGGAAAGAATCCAGAGAAAAAATTGTGTGGTGCGACGAATTGCTGCTGACCTTCAAAACCGCCCAACGCGCATTGGACAACCACCGGACCATCACAATTCCCCAGCCCCAAGATGCCCTGTGGATTGTGACCGACGGCTCCGTCAAGAATAGAGGCATCGCAGCCACACTATATGTACATCGAAATGGGTCGCTGCTCTTAGCTGGATTCTTCAGTGCCAAGCTTCGTAAGCATCAAGTGACTTGGTTGCCTTGCGAGATTGAAGCCTTGGCTATTGGTGCGGCAATTAGACATTTCGCCCCGGCTATATCATTCAATCCCCACACACAACCGAGTTACTCACCGACAGCAGACCTTGTGTTCAGGCTTACGAAAAGCTCAAGAGAGGAGAATTCTCAACCAGTTCAAGAGTCACCACCTTCCTGTCAACAGTCAGCCGCTACTCAGTCCACATACGTCATATCGCCGGAGTTGAGAACCTACCTTCTGATTATGCAAGCCGAAACCCAAAGGAATGTTTGGACTCTACCCCAGTCAAGCGTGGAAGCACCTCGCTCCATTGGCATTTCATTCGCTGCTGATGTTGTCCGACGCCACCGACAATTAATCCTCGTACTAAGAGAGACTGTCTCCTCGTGCACTTTAACCGCCCTTATCCAGAGTGAGAACCATGAGGATCTCCGCAACGCCCTCATAGTCTTATGTTCCCAGCTGCGTTCCTTACACGATGGCGGCGCCACAGTCCGTGTTGATCCTGCCCCTGGTTTTTGTGCACTTGCCACCGACCCAATCCTCCATTCCCATGGCATTACCTTGGAGATCGGCGGGGTCAAGAATCCAAACAAGAATCCTGTCGCGGAACGCGCCATTGAGGAGCTCGGTTTAGAGCTTCTAAACCTGTCCCCTGCGGGAGGACCTGTGTCTGTCGTCACTCTCGCGCTCGCTACGGCAAATACAAACTCCAGCATCCGGCGTGATGGCCTTTCGGAGCGGGAGGTCTGGACTCAGCGCGACCAGCTAACTGGTGAACAGCTACCTATAGTTGACAGACAACTCATCATTAGTCAGAATTTCTCCCGCCAGCAGAATCACACACCCAGTGCAAAGTCTAAGGCTCGTGGCCGTACCAACCTACCCACAGCTGCCGTCTCTGTCGGCGACTTAGTCTTCTTGAAAGGTGACAGAGACAAATTGAAAGCCCGTGAGAGGTACCTTGTGGTCAACATTCGTGAGGACCTTTCTTGTGAGCTCCGGAAGTTCACCACCTCCCAGTTTCGCAGCAAACTTTACGTGGGGCCTATGTCTGAATGTTATACAGTGGCCCCGACAGTTTTGGCTCAGTCTCCGCAGGGCCCCATTCGTGGCCTTCACAAAGCCTCCCCATTTGACTCTGATGATGACGCCGACCCTGTTATTCTACCACCAAGACACTCCACTGTCCCTGCACCTTCTCTGGTGGCTACTCAGCCTCCCGCCTATGGACAACCCACGGTTCCGCAACCTGCGCATGATGTTGTCTCTGTTCAGGAACTTCCTCCAGTACCTGCAGCCATTGTTCCACCACCCTGCACTCCAGCCTCTTCTCCAGACTGCTCGGTTCTTTCAGATATGTCAACTGCAAAGAGAAAGAGATGGTACATCCCAGCCTCTGTCACAGCCAAAACCACATTCAATCCCATCAGATCTATTGTAGACGGAATGAACACCACCCCCAATCCTGCAAAACAGATGATTGCTTTATCCATCGGGGATCCATCTGAGTTTGGAAATTTGGAGCCTTGTAATGAGATGGTGGACGCTGTCGTGAATTGCGTAAAGAAGGCAAAACACAATGGATATGCTCCATCAACAGGCTATATCAAGACACGCGAGGCCATCGCTGCTGAACATTCTTTCCCATTATCTCCACTAACTTATGAGGATGTTGTTTTAGCTTGTGGGTGTTCTGGAGCCCTGGAGCTGGCTCTTGATGTTCTCCTCAATCCTGGTGACAATGTTCTTCTTCCCAAACCTGGCTTCTCTATTTACCAAACCTTGAGTATTTCACGGGGTCATGAAGTCAGACATTACAATCTTCTGCCTGACAGGTCCTGGGAGGTTGATATTGATCACCTTGAATCTCTGATTGATGAGGGAACCAAAGCCATTGTTGTGAATAATCCCTCCAACCCATGTGGTTCAGTTTACTCCAAAGAACATCTTGAAGCCATTCTGGAAGTGGCTGAAAAATACATGCTTCCCATCATTGCCGATGAAGTGTATGAGTATGCTGTATTTCCTGGATACAAGTTTCATCCTCTTGCCCAGCTGTCAGAGAATGTTCCTATCCTAACTTGTGGAGCAATTTCCAAAAGATTCCTTGTGCCTGGTTGGCGGCTAGGGTGGGTTCTTATCTATGACAAAAATGAAGCATTTAAAAGTGAGGTGAAACCAGGACTAATGGCACTGTCACAGCAAATTTTGGGTCCCAACACTCTCATTCAAGGAGCTCTTCCAGAGATATTGGCCAACACACCACCAAGCTTCTTTGAAAACACAATGAAGATCATTCAGCATCTTTGCGTTGTGGCGCTTGATGATGTTTGCCATGTTACTCGTGCAGCTATAGCTGACTTTCACATTGTTCCTGTTGAACAGCTTGTGGAGGATGTGTGCTTTATGCAATGTGAAACCGGCTTTCCTGACTTGCAAATTTCAGTTAGGGATATGGAATATGGCAAAAAGTGGACACATTTCACGCAGTTGGAGATAAAACTATCAACCATATTGTTTTACATTGCACAAACTGGAAAGCTTAAAATTATTGTTCTGCTGCGATTTCGCCAACAGAAAAATGCCAAAATCTGCTATGAAGCACTTCTTAGAATTCCTGAGCTAAAACCTGTCATGCCGTGTGGATCAATGTACATGATGGTTGGTATTGACATTTCTGAGTTGGATGGCATTACAGATGATTTGGACTTCACAGAGAAATTGATAGCAGAGCAGTCAGTATTTTGTCTGCCTGGAAAGTGCTTTCAGTACCCAAATTACTTCCGCATTGTCCTCACAGTACCTGAAGAAATGACCCAGATGGCTTGCAAGAGAATAAATGAGTTTTGCAAAAACCACAGGAAGAATGATGCAAAAATGGATATCTAA

Transcript

ANN09279-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8QZR1	Tyrosine aminotransferase OS=Mus musculus OX=10090 GN=Tat PE=1 SV=1
P04694	Tyrosine aminotransferase OS=Rattus norvegicus OX=10116 GN=Tat PE=1 SV=1
P17735	Tyrosine aminotransferase OS=Homo sapiens OX=9606 GN=TAT PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002933 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17919 all species →	RT_RNaseH_2	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF00155 all species →	Aminotran_1_2	Aminotransferase class I and II	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR015422 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR015421 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR005958 all species →	Family	Tyrosine/nicotianamine aminotransferase	Interproscan
IPR041577 all species →	Domain	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	Interproscan
IPR004839 all species →	Domain	Aminotransferase, class I/classII	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR015424 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45744 all species →	TYROSINE AMINOTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0004838 all species →	Molecular Function	L-tyrosine-2-oxoglutarate transaminase activity	Interproscan
GO:0006559 all species →	Biological Process	L-phenylalanine catabolic process	Interproscan
GO:0006572 all species →	Biological Process	tyrosine catabolic process	Interproscan
GO:0006520 all species →	Biological Process	amino acid metabolic process	Interproscan
GO:0008483 all species →	Molecular Function	transaminase activity	Interproscan
GO:0030170 all species →	Molecular Function	pyridoxal phosphate binding	Interproscan
GO:0009058 all species →	Biological Process	biosynthetic process	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN09279-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.