Gene detail

Detailed information of ANN09576-RA in Leptoseris scabra

Genomic Location: Scaffold_6__1_contigs__length_62720928:55569619...55582071
NR annotation: CAH3167877.1, unnamed protein product [Porites lobata]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5U403	Diphosphomevalonate decarboxylase OS=Danio rerio OX=7955 GN=mvd PE=2 SV=1
Q62967	Diphosphomevalonate decarboxylase OS=Rattus norvegicus OX=10116 GN=Mvd PE=1 SV=2
Q99JF5	Diphosphomevalonate decarboxylase OS=Mus musculus OX=10090 GN=Mvd PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004217 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18376 all species →	MDD_C	Mevalonate 5-diphosphate decarboxylase C-terminal domain	Domain	Interproscan
PF00288 all species →	GHMP_kinases_N	GHMP kinases N terminal domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036554 all species →	Homologous_superfamily	GHMP kinase, C-terminal domain superfamily	Interproscan
IPR020568 all species →	Homologous_superfamily	Ribosomal protein uS5 domain 2-type superfamily	Interproscan
IPR029765 all species →	Family	Diphosphomevalonate decarboxylase	Interproscan
IPR041431 all species →	Domain	Mvd1, C-terminal	Interproscan
IPR005935 all species →	Family	Diphosphomevalonate/phosphomevalonate decarboxylase	Interproscan
IPR014721 all species →	Homologous_superfamily	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Interproscan
IPR006204 all species →	Domain	GHMP kinase N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10977 all species →	DIPHOSPHOMEVALONATE DECARBOXYLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004163 all species →	Molecular Function	diphosphomevalonate decarboxylase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0019287 all species →	Biological Process	isopentenyl diphosphate biosynthetic process, mevalonate pathway	Interproscan
GO:0008299 all species →	Biological Process	isoprenoid biosynthetic process	Interproscan
GO:0016831 all species →	Molecular Function	carboxy-lyase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN09576-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.