Gene detail

Detailed information of ANN09823-RA in Leptoseris scabra

Genomic Location: Scaffold_6__1_contigs__length_62720928:60878539...60888466
NR annotation: QKY88516.2, Acropsin 2 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN09823-RA

ATGAGAAGTTCTATGGATCAAGATATATATAACACCATCGCAGTTTTGTACGGTTTGTTAGCATCAGGAACAGTCCTTCTAAATACAGTAGTGATATTAACCTTTTACAAAGTGCGCGCACTTCTCATACCAGCCAGTCTACCGATACTTAGCTTGGCTATTGCTGATGTCCTGTTGGCTTTAGTCACGATGCCTTTGGGAATTGCAGCCAATATGTCTCACCGATGGATATTCGGTACCGCAGGATGTAATTGGTACGCTTTTAGCCACACTGTCGTTGGCTTGTCGTCCATTTTACATCATGCTCTTATTGCACTGGAACGTTGTATGACAATTTATCAACCAATGAAGAGACATTTTAGCACGCGGAGGATGTTGAAGATAATTGTGTTTGTCTGGAGCTTTGTAGCTGTGTGGTGTTTTTCTCCAATCCTTGGTTGGTCATCGTACGTCACTGAGGGCAGTGGGGCAGTTTGTTCCATCCAATGGCAATCCACTGACACTTTTGATGCCATCTTTGTCATGTTGACTTTTGTTTTTTTCTGTTTCGTTCCATTTTGTTTTATTTTTGCATGCTATACAGCAATCGCCCTCAATCTTCGGAAAATGAGCAAAATGGCCAAAATTACCTGGGGCAAAGATTCGCGGATTACAATTGACAAGGTAACGGTGAAGAAAAAAGCAATTACTCACGGTGCGATTATGGTGACCGCAGTTCTTATCACGTGGTTACCGTACGCTTTTGTTGCGTTCCGTGCAACGCTTAGCCAACAAGAAAACATGTCCGCACTGGTATATTCTATAACGGCAATGTTTGCTAAAACATCGACCTTTATTAATCCAATTATCTGCTTTTTCTGGTACAAAAGATTTAGAGAGGGAACTAAAAAACTATGGATTCGAACAATGAGAAGTCAAGAGCGAGGTAGGCGGCGTGCCCGATGCTCTCAAACCTCGATTGTCTGGTCAACTGGTGAATCGATTGTTTTTCTCAAGGCTGTTGGTTGTAGATCCGGTGACCTCTTACAAGCTGAAAATAATTTGAGCAAATTAAGCGAGACAGTTTGCATGCTTGAGCAACAAATCAAGACTTCTATGGATCAAGATATTTATAACACCATCGCAGTTTTGTACGGTTTGTTAGCAGCAGGAACAGTCCTTCTAAATACAGTAGTGATATTAACATTTTACAAAGTGCGCGCACTTCTCATACCAGCCAGTCTACCGATACTTAGCTTGGCTATTGCTGATGTCCTGTTGGCTTTAGTCACGATGCCTTTGGGAATTGCAGCCAATGTGTCTCGCCGATGGATATTCGGTACCGCAGGGTGTAATTGGTACGCTTTCAGCCACACTGTCGTTGGCTTGTCGTCCATTTTACATCATGCTCTTATCGCACTGGAACGTTGTATGACGATTTATCAACCAATGGAGAGACATTTTAGCACGCGCAGGATGTTGAAAATAATTGTGTTTGTCTGGAGCTTTGTAGCTGTGTGGTGTTTTTCTCCAATCCTTGGTTGGTCATCGTACGTCACTGAGGGCAGTGGGGCAGTTTGTTCCATCCAATGGCGATCCACTGACACGTTTGATGCCATCTTTGTCATGTTGACTTTTGTTTTTTTCTGTTTCGTTCCATTTTGTTTTATTTTTGCATGCTATACAGCAATCGCCCTCAATCTTCGGAAAATGAGCAAAATGGCCAAAATTACCTGGGGCAAAGATTCGCGGATTACAATTGACAAGGTAACGGTGAAGAAAAAAGCAATTACTCACGGTGCGATTATGGTGACCGCAGTTCTTATCACGTGGTTACCGTACGCTTTTGTTGCGTTCCGCGCAACGCTTAGCCACCAAGAAAACATGTCCGCACTGGTATATTCTATAACGGCAATGTTTGCTAAAACATCGACCTTTATTAATCCAATTATCTGCTTTTTCTGGTACAAAAGATTTAGAGAGGGAACTAAAAAACTATGGATTCGGACAATGAGAAGTCAAGAGCGAGGTCGGCGGCGTGCCCGATGCTCTCAAACCTCGATTGTCTGGTCAACTGGTGAATCGATTGTTTTTCTCAAGGCTGTTGGTTGTAGATCCAGTGACCTCTTACAAGCTGAAAATAATTTGAGCAAAGTTAAGGAAAACGTAGGCATTTCCAATGACGATTAG

Transcript

ANN09823-RA

Protein

Uniprot

Uniprot term	Description
Q5YKK9	Melanopsin OS=Felis catus OX=9685 GN=OPN4 PE=2 SV=1
Q9YGZ1	Rhodopsin OS=Atherina boyeri OX=87785 GN=rho PE=2 SV=1
P35404	5-hydroxytryptamine receptor 1B OS=Didelphis virginiana OX=9267 GN=HTR1B PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00001	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000276	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR017452	Domain	GPCR, rhodopsin-like, 7TM	Interproscan
IPR050125	Family	G-protein coupled receptor opsins	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24240	OPSIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004930	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0005887	Cellular Component	plasma membrane	Interproscan
GO:0007602	Biological Process	phototransduction	Interproscan
GO:0008020	Molecular Function	G protein-coupled photoreceptor activity	Interproscan
GO:0071482	Biological Process	cellular response to light stimulus	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K04255	OPN4, Rh2_7; r-opsin	-	G protein-coupled receptors	ko04030	deepkoala