Gene detail

Detailed information of ANN09880-RA in Leptoseris scabra

Genomic Location: Scaffold_6__1_contigs__length_62720928:62173411...62195750
NR annotation: XP_015780813.1, PREDICTED: uncharacterized protein LOC107358739 [Acropora digitifera]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN09880-RA

ATGGCCGCTGTTGCTTCCGATGGCGAACAAGTTGCTGATCTCGCAAACGCTGATATTTCAGCAGAAGAAAAACATGCAGACGAAAAACCAGTCGAAGAAGAAACCAAAGAGGAAGACAAGAAGGATGAACCCACAGAGGAACATGAAGATGAGCCCAAAGATGAACATTCCAAGCTTCAGAAGCTGAAACCACTATTGTCGTCGTGTAGTAGTATGAATGGGGACAGTAAACAGACCGAGGAAAAGACACAAGAGACTTCTGAGGGATTGGGTGACCATGTAGCCAAACACTATAATGAGCACCCTGAAGGAAGTAAGGAAAGCCGCAAAGAGAGTCCGATATTTTACTTAAGGAACTTTAACAACTGGATCAAGAGTGTTCTTATCAATGAAAGTCTGGAAAAAATCAAAAGAGCTAATTCCAGGGATATAGCTGTGCTTGATCTATGCTGCGGAAAGGGTGGAGACTTGCTCAAATGGCAGAGAGGAAGAATAAAGAAACTTGTGTGCGCAGACATTGCTGAAGTTTCTGTGGAACAATGCAAGGAGCGATACAAAGAACTTAAAAAGACACATGAGAACCGGCGTTATCGAGACCCTCTCTTTCAGCCTGAATTTATCACTGCTGATTGTAGCAAGTCTGTGGTGCTATGTGCTGAACCATTATTGATCTGTGGAGATTTCAATATTCATGTGGATGTTTACGATGATCCTAACTCTGTCGCCTTTACTGATCTGCTTGATTCTATGGGCCTCGAACAGCATGTGAAATCTCCAACGCAACTCCATGGTCACACATTAGATTTGATTATCACGCGGAAATCTGATTCTATTGTTGCTGGCACTCCCTCCTGTGATAATTTCCTTTCTGATCACTGTACTGTCCTCTGCAATTTAAATACGTCAAAATCGAACCCTACTGCTAAGAAAGTTAGTTATCGAAAAATTAATTCGATTGACTACGAACAGTTTAAGTCTGACCTTCGTGCGTCCGAATTGTTATGGAACATTCCGAGTCACCTTGATGACTTGTTAAACACTTACAATACGACGCTTTCAGCACTCCTGGACAAACACGCTCCCCTTCGTACGAGGTCAGTTGTACACAAGACTCGTGTACCTTGGTTCACGGATGAAATCAGGTCCATAAGAAGGTTGCGCAGGCAATCTGAGCGTAAATGGAGGAGAACTAAACTCGATTCCGATTGGCGGGCCTTCAAAGCCTTAAGAAACAGAACGACGTTTGTTATGAATAGGGTGCGACGTGAGTTTTACTCCGACTTTGTTAATAAGATGTCTGGTGATCCACGGAAATTGTTTGCCATCATGAAAAAGATGCTTAATCAAGTGAAGGAGTCCCCTTTTTCAGAGCACTGTAACAAGTTGGCCCTTGCTAATGAACTGGGAGCCTTTTTTAAAATGAAAGTATCGAACATTCGCTCTGAGTTAGATGTAGCAGCCACAGTTCACAACAATCACAGTACCTTAGCTCCATCGGCAAATTGTTTCCAACCCTCATCTTCCTCAGGATTTTTCTCTAATTTTGAGCTCCTCAGTATAAACTCTGTCAAGAAACTTGTGCTTAGTGTACCAACGAAATCGTGTCCTCTGGATCCTGTCCCCACGAAAGTAGTCAAAGAATGTTTGGATGACCTCGTGCCCTTGCTAACTGTTATTATTAACCAGTCATTACAGTCTGGTGTTTTCCCTGACGTATGGAAAGAGGCCCTTGTAACTCCTACGCTTAAGAAGTGTGGTTCTGATTTGGCTTTCAAAAATTTTCGCCCTATAAGTAATCTCCAATTTGTTTCTAAGTTGGTCGAACGAGCAGCAGCGGATCAGCTACAGTCCCAACTGGTTAAGAATAACCTGTTTCCTACGCTCCAATCAGCATATCGTCCTAACCATAGTACTGAAACAGCCCTACTCAAAATTAAAAATGATATTCTAATGAATATGGATAAACAACACGTTACGCTTCTTATCCTTCTGGACCTCAGCGCTGCCTTCGACACGGTTGACCACCAAATTCTCTTAAACCGTTTGTGCACAGAATTTGGTCTGTTCAATATTGTCAACAACCACTTGCCAAACGTACATGCCTATGCCGATGACACTCAGTTATATTTGGCTTTTAAACCTGGTAATTCCACCAACGAAACTGCTGCTGTGTCATCTATACAATCCTGCATTCGTGATCTACAGCACTGGATGCTGATGGACAGATTAAAACTTAATCCTGACAAAACAGAATTTCTTATTCTTGGAACAAGACAGCAACTCGAGAAAGTAATTACTTCACACCTTGTTGTTGGTGAATCTCGAATATGTCCTTCAACAAAGGTGAAAAACTTGGGATCATGGTTTGACCCTAATCTTGATATGATTAGCCATATCAATAACATCTGCAGTTCGTCTTTTTATTATCTCTACAACTTACGTAGGATCAGAAAGTATTTGCCTCATCAATCTGCCATATCCCTTATCCACGCGTTTATCACTAGTAAATTGGACTACTGCAACAGTCTTTTATATGGCCTGCCTGCAATTCATATGAATAAACTTCAAAGAGTTCAAAATGCTGCTGCGAGACTCGTCACTAACACTCCTCGCATCTGTCATATCACTCCCATTTTAGAAGATCTTCACTGGTTGCCCATCAAATACAGAATTGAATTCAAAATTGTGCTGCTAACATTCAAGTGCCTCCAAGGACTTGCACCACAATATCTGATCGATCTTATTGCTATCGCTCCCCAGTCAAGATATAATCTTAGGTCCAGGAAGGCAACTCTGTTGGAGCGACTTGCTGACAAATACGAGGATACAAATCTTCAGTTTGACTTGACTAGCTGCCAGTTTTCATTTCATTACTCATTTGAGAGTTATGAGCAAGCTGACATGATGCTGAAGAATGCATGTGAGCGACTCAAAGTTGGAGGATATTTTGTAGGAACTACACCTAATGCCTATGAGATGATTCGTCGGTTGGAAAAGTCTGAAGATCTCTCCTTCGGAAATGATGTTTATAAAGTCACATTCGAGAAAAAAGATGACTACCCTTTGTTTGGCTGTAAGTACGATTTTCATCTTGAGGGAGTCGTGGATTGCCCTGAATTCCTGGTCTACTTTCCTCTGCTTGAAAAAATGGCAGAAAACTATAACATGAAGCTAGTTTATACAAAGACTTTTCATGACTTTTTCCGGGAGAAGTCAAAGGAATCAACCTCACTACTTTACAAGATGAAAGCACTGGAGACTTACCCTCCCCGCCAAGAAGGTGAGAGTCTGGTGTCGACTGCTGAGGATGCATACACACATGCCAAAGACTTTCTGGAAGGAATTCAGTTGAATCAAGAGAAGTCTTCATCTACCAGCAAATACAGAGATCACAGAGAAAAGAATCTAAAACATGTGGGAACAATGTCCAAATCTGAGTGGGAGGCTGTAGGAATGTACTTGGCATTTGTTTTTGTCAAGATCGACCCAGAAGCAGAAAAAAGAAAGCAAGAAGAGGCTGAAAGGAGAGAAAAGGAAAGAGCTGAGCGAGAAGCACAAAGGAAAGAGAGAGAACGAGAAAGAGAGGAGAGAGCTAAAGCCGAACGAGAGAAAGAAGAACAAGCAAAAGCTGAACAGGAGAAAGAAGAACAAGTAAAAGCTGAACAGGAGAAAGAAGGGGAATCTGGTGCTGAACAAGGAAAGGAGGAAGACCAAGCTAAACCTGAGCAAGAGAAAGAGGAAGAAGAAAAACCGGAAGAAATGGAAACTGAACCATCAGCATCTACAGAGGCAGTAGAAGAAAGCACAGAATCAAGGAAGAGGAAACATGAGGAGACTGGGGCAGAGGAAGGAGAGCCTGCTGAAAAGAAGCAAGAAACTGTTGCTGCTGGTGCTGGTGAAGACGCTTCCGGTTGA

Transcript

ANN09880-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O43148	mRNA cap guanine-N(7) methyltransferase OS=Homo sapiens OX=9606 GN=RNMT PE=1 SV=1
Q4R7K1	mRNA cap guanine-N(7) methyltransferase OS=Macaca fascicularis OX=9541 GN=RNMT PE=2 SV=1
Q5U2U7	mRNA cap guanine-N(7) methyltransferase OS=Rattus norvegicus OX=10116 GN=Rnmt PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000016 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14529 all species →	Exo_endo_phos_2	Endonuclease-reverse transcriptase	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF03291 all species →	mRNA_G-N7_MeTrfase	mRNA (guanine-N(7))-methyltransferase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR005135 all species →	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR004971 all species →	Domain	mRNA (guanine-N(7))-methyltransferase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46670 all species →	ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN09880-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.