Gene detail

Detailed information of ANN09895-RA in Leptoseris scabra

Genomic Location: Scaffold_6__1_contigs__length_62720928:62378787...62382621
NR annotation: XP_020624025.1, vacuolar protein sorting-associated protein 4A-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
O75351	Vacuolar protein sorting-associated protein 4B OS=Homo sapiens OX=9606 GN=VPS4B PE=1 SV=2
P46467	Vacuolar protein sorting-associated protein 4B OS=Mus musculus OX=10090 GN=Vps4b PE=1 SV=2
Q0VD48	Vacuolar protein sorting-associated protein 4B OS=Bos taurus OX=9913 GN=VPS4B PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09336	Vps4_C	Vps4 C terminal oligomerisation domain	Domain	Interproscan
PF17862	AAA_lid_3	AAA+ lid domain	Domain	Interproscan
PF00004	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015415	Domain	Spastin/Vps4, C-terminal	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR041569	Domain	AAA ATPase, AAA+ lid domain	Interproscan
IPR003959	Domain	ATPase, AAA-type, core	Interproscan
IPR050304	Family	Microtubule-severing AAA ATPase	Interproscan
IPR003960	Conserved_site	ATPase, AAA-type, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23074	AAA DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0007033	Biological Process	vacuole organization	Interproscan
GO:0016197	Biological Process	endosomal transport	Interproscan
GO:0140603	Molecular Function	obsolete ATP hydrolysis activity	Interproscan