Gene detail

Detailed information of ANN10066-RA in Leptoseris scabra

Genomic Location: Scaffold_8__1_contigs__length_51692913:3468034...3470790
NR annotation: CAG2207539.1, unnamed protein product [Mytilus edulis]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN10066-RA

ATGGGTATTTCGTCCCAATCGTTCGTTACACCAGACGCGCTTCCTTTCGCGCCAAATTTCTTTGTCACATTACATAATCAAGTTTACGCTAAGGGGCAACCCAATTTTTTAGGCGCGCGTTTATCTGTGCCCACTTCGTTACATCTTTCCTTGTGGCGGTCTTTACTGACCGAGTATTCCGATGTGGCAGTTTGTGACTTCTTAGAGTTTGGGTGGCCCATCGGTTACAATTATCATGGGGTTTTACCTTCTAGTGATTTTCGCAATCACAAAGGTGTACTAGACTTTCCGTCCGCCGTTGACAGCTACCTGTCAACGGAACTTGCGTTAGGTTCCGTTTGCGGTCCATTTGCACGCAATCCTTTCGTGGCGCCTATCGCCTTGCCTTGTCTCCATTGTGATTCAGTTCCAAAGCCGGACAGCAATGAATGTCGGTTTATTCTTGACCTCAGCTGGCCAGCCGGTTCGTCTGTCAATGACGGAATTTCTAAAGACTTCTTTTTGGGTGAACCTGTGTCGTTAACTTATCCCACTGTAGACGACATCGCGGAGCGTATCGTTCAGCTGGGGCCGGGTTGTTTGTTGTTCAAACGTGATCTAAAACGTGCTTATCGTCAGTTGCCGGTAGATCCTTTCGATTATCCTTTGTTGGGATATTCGTGGCGGGACAAGTTGTTTTTTGACGTTCGATTGCCAATGGGTCTCCGGTCCGCTGCTATGGCTTGCCAGCGAGTCACGAACGCGGTATGTTTTATGCTCTCGCGGGTCGGTTGCAACGTTTTGAGTTATTTAGACGATTTCATGGGGATCTCCGCGCCGCGAACCGCCTTCGCCGATTATGCGCTCACTGGTTCGTTACTACAGGCCTTAGGGTTACAAGAGTCGTCTCACAAGGCTTGCCCTCCGTCTACTCTAGTTACTTGTCTCGGAGTTCTCTTCGACACGATAAATTTTACTATGTCTGTTACGCCGGACAGACTCTTGGAATTGCAAACGGATTTGTTACCTCAGTGGCTCACTAAAAAGTCCGCGACCAAAACCGAGCTACAATCTCTGATAGGCAAACTTGCCTTTGTTTCCAAATGCGTTCGGCCGGGTCGTTTGTTTCTAACTCGCATTCTGGACACTTTGCGTTCCTTGCGCCGCAATCATCATCGGGTCAAGTTATCGGCCGAATTTCGGAAGGATATCCGTTGGTGGATGCGGTTTATCAACGTTTACAATGGTGTATCTCTTATTCCCACGCAATTGTGGTCTGCGCCCGATAGTATTTTTTCTACCGACGCCTGTTTGACAGGTTGCGGGGTTCTCCTTCAATTCACCGCTATTCATCTTCTTGAGGCCTCAGCTATCGTTCTAGCTCTTCGACTCTGGGGTCGTTCTTGGCGTGGACTACGGATTATGGTTCACTGTGACAATTTTTCCGTTGTCAGTTCCTTAAACTCCGGTCGCGTTCAGGATAAATTGTTAGCAGCTTGTTTGCGAGAAATTTGGTTTCTCGCCGCGGTGCATGAGTTCGAAATCCGCGCTTGTCATCTTTCGAGTTCCGAAAATCGTGGGGCCGATTTACTGAGTCGTTGGCACTTGAACTCTTCCTTTCAGAACGAGTTCTTCTCTACGTATGGCTCACTTGATTCATTATTAACAAAGCTACAGAGAGATCTTAAGAAGACGCGACGAGCGGCGTATGCGGACGGCACGCATAAGAACCACAAGACTCAGTGGAGGGCTTATCTCTACTTCTGTTTTTCCTTCGATCTTGAGCCTCTCCCGGCAACTCTTGATACCATATGTTTGTACTGTCAGTTTCTTAGCCGTTCCATGACTCCCCAGTCCATTCGTAATTATCTTAGCGGGGTCAAGCTTCTTCATGTTTTCACGGGGTTCGAATTCCCCTTTTATGAGACGCCAGAGTTAAAATTAACTTTACGAGGACTCGATCGTATCCTCAAACATGCTCCTTCGCGTGCTCCGCCTGTCACGCCGGAGTTGCTGCGAGAGTTAATCCAGTGTGCTACTTCTTCTCCTCGTGATTTAGTTTTTTCCTGCGCCTTTCTCTTCGCCTTTTTTCTTTTCGCGCGAATTTCTAATTTGGCGCCAGCATCTGTCAGTTCATTTGATCCCTCTAAACAACTTTGCAGGGGAGACATAGTTGTTACTAGTTTTGGATTGTCGATTTCCTTTAAATGGTCTAAAACAAATCAGACAGGTTCCAAGTTGCTGAAACTTCCATTATTGTATACTCCAGATCCTAATTTGTGTCCGGTTCGTGCATATCTTCGCATGTGTTCTTGCTTGCCTGCGCCCGCTTCGGCCCCCGCCTTTTTCACGCATTTCCGTGCAGGTTCGTACTTTGTCATCACTAAAACGCAATTTGTTTCGGTTTTTCGTCGCCGGCTGGCCCGCCTAGGTGTTCATTACCCTTCTCGTTTTAGGGGACACTCCTTCCGTCGAGGGGGAGCTACCTGGGCCTTTCACACAGGGGTCCCGGGTGAACTGATTCAAATTTATGGAGACTGGGCGTCGGACGCATATAAATGTTACCTTGAATTTTCCGAAGATGCTAAGCTTCGCGTCGCACGGGGGATGGTTGGTGCACTTCCGGCGGCACTTAATTCCTAA

Transcript

ANN10066-RA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000680 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13456 all species →	RVT_3	Reverse transcriptase-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002156 all species →	Domain	Ribonuclease H domain	Interproscan
IPR013762 all species →	Homologous_superfamily	Integrase-like, catalytic domain superfamily	Interproscan
IPR010998 all species →	Homologous_superfamily	Integrase/recombinase, N-terminal	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR052055 all species →	Family	Hepadnavirus polymerase/reverse transcriptase	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR011010 all species →	Homologous_superfamily	DNA breaking-rejoining enzyme, catalytic core	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33050 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0004523 all species →	Molecular Function	RNA-DNA hybrid ribonuclease activity	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006310 all species →	Biological Process	DNA recombination	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN10066-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.