Gene detail

Detailed information of ANN10128-RA in Leptoseris scabra

Genomic Location: Scaffold_8__1_contigs__length_51692913:4642404...4654191
NR annotation: CAH3195432.1, unnamed protein product [Porites evermanni]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN10128-RA

ATGGCTTACTTTACTGGATACACAGTCATCGAGGAAAAAGACGCCAAAAGTCGTGAAGAAGACTCCGATCCTGACAACGATAGTGAGGATGACTTCGAAGGCACTGATTTCGACTTTGTTCAAAAGCCGTCGCGTCAACTTCGCCAAGTTGTTCAAAACATGAGAGAACTGCAATTCAACAACGGTCGTTTCGTCCCAAAGGGAATGACCCGGGTGCGTGGTAAATTTGATCGTCTCTTCTCTTACCCATGGTGGATGGTTCGAGTGGAGATAAACTCCTCTGTAAAACCACCATCAAACAACGATAAGCTAGCCTGTAAACTACCTTCTTACAGTTACAGAACAGACGGGAATGTTGGTGGAGATGTCCTGTCGTTGTTCTTGATTAAAGGCTGCAAGGTACACGAGCAACACGCCTCTAGGCTGTTGGAGTTCATTAGGATAAACAACCTAAGACCAACGCTTAAGGATCTGATCTACAACCTGGAGAAATTTGGTGACACCAGCTGTGCTGGTGAAGATAACAAAACTATAGCTGAGCAGATTCGGGCAGCACTGTATAATTCACCAACAGGTAAAGCTTTCACTGTACCAGTTTTTCTACAATTTGTCCACCGGTTACTTCCCCGTCGAGCTTGTTCAATCTTTGATGATTGCGAACAGGAAACACTTGAAAGTCTTAATGAAGCCATCCAGACGGAGCCATGGATTTTGGGTTACTGGACTGTGCTGTCTGCAAGATTTGGTCTCTCAGGTTGTGAAGCAAAGCTTTCATCTTTTGAGGAATGTAATCTACTACAGAAGATGCCAGTTGTTATGCAGGATGCACTACGCATTTACCACTCCCTTCGTGAAATGACTCGCAAGTTTGGACACACCTATGTGTATTTGCAGCAGCTCAAAGGAAAGTTATCCATAACAAATTGGGAGGACAGTCTTTCATATCTGAGCTCAATTGATGCTGTGAAAACCTCAGAAGACCATCTGGGCAATAAACGACATGTGTTTTTGCCTTACCTTCGTCGCTGTGAACAAGGGATTGCTTGTAACTTGTCAAAGATTATCAGCAAAACACCATGGACTGGCAACATTGAAATTGAGGAGCAGGAATTCAGTGGAGATAATGATCAAATTAATGCAGCCAAGCTCATTACACAGAAACCTGTGGTTGTGATGTCAGGGCGTGGTGGCTGTGGGAAGACATTTGTAGTTTCAAATGTATTGTCAAAGGCATTGGAGATGAAAAAGCAGTGTGTTCTCCAAGAATTCGCAGGTGATTTAGACGACAAGAATGTCAGTACATCTGATGCTGAAAGAGATAAAGCCAGCAAGACAAGACAGGAAGAGATTGAAGAAGAGGTATTGATCACAGCACCAACTGGCAAGGCAGCCTCAATTCTGGGCAGACGGACCAGCCTTCCTTCCCACACTCTACATTCAGTCATATACAGTTGCACATTCTGGGAACAAGCTGGGGGACAAGGTGATTGGAAGTTCAACAAGGTGCGTCTGCTAGTATGCGATGAGTGCAGCATGATTTCTGTCAGAGTGTTTTCAAAGCTTCTTGGCTGTTTGACGAACTGGACGCAGCTGCAGCAGGTAATCCTCTTGGGAGATGTAGACCAATTACCTTCTATTGAGCCAGGAAACTTTTTGAGCGACATTTATACAGCATTGGAAGCACATGGAGTTGCCATCAGATTAAGAACCAATCACAGGACAGACTCAGAACTTATTGTAAGGAATGCTGTGAAAATTTCAAATAGACAAATGCCGACATTTGATCCCCTGAGATTTTTATCAGTGCCATATGGTTTTGGTGGCAATGACAGTGACAGAGAAACAAATACAGTTACACAAGTGGTAAAAACTGTGCTACAGAGAGAGGAATTACGTGACCATCGGTCCTCACAATTTGTTGCCTTCCGACGAAAGGACTGTGATATTATCAATGAACTATGTGCTCTTCATTACAACAACCACTCCGCGTTAGACAGGCACAAGAAACCTGATTATCGAGTTGGTGACAAGATCTGCATCAGGCGTAATGTAGAATGCTTTGATGCTTACCAGAAGAAACCTGTTAAGTTGTGTAATGGAGAGATTTTTTTCATCACAGAGATCATCCAAGAACAAGACAACCTGGGAAAGAAGAGAACTTTTTTCAGCCTAGACAATGGCAACAGCATCATCAAGATCAGTTTTCAAGAGCTGAGGGCAGCCAAGCTGGCACATTCTTGGGCAAGAACCATACACACCTTCCAGAAACTTTTGTTGAATTTTATCTATCAGGGATCAGAGATTGAGACTGTTGTGTATGTGGTAGGACTTCCATACTATCAGAACTGCCAGCACGTGTACACAGCTGTGACTCGAGGTGTACGACAAGTAATAGTCATTTACCATCCAAGCCACCTACAGAGAGTCATTGCAACTCCTCCCGATAAACGTCAGACAAAACTGAAGGAAGACCTGTCAGACAAACTGGAATACGGGATGATCTGTTGGTCTGATGAAGGGGATGATTGTTTGGACAACGGCAGTGGGATTACTGTCCAGGATTCTGGTGGGCCTGAAGTAGCACCTACCTGCTCTGTAACAGAGTGCAATAGTGAAACTGAAGTACAATCCGCAGGAGAGGATCTGATCTGTTGGTCTGATGAAGACGATGATTGTTTGGACGACGGCAGTGGGATTAGTACTGCCCAGGATTCTGGTGGGCCTGAAGTAGCACCTGCTTGCTCTGTAACAGAATGCAATAGCAAAACTGAAGAACAATCCTCAGGAGAGGATCTGTTCTGCTGGTCTGATGAAAACGATGATTGTTTGGACGACGGCAGTTGGATTAGTACTGCCCAGGATTCTGGTGGGCCTGAAGTAGCACCTGCTTGCTCTGTAACAGAATGCAATAGCAAAACTGAAGTACAATCCGCAGGAGAGGATCTGATCTGTTGGTCTGATGAAGACGATGATTGTTGGGATGATGGCAGTTGGATTACTGCCCAGGATTCTGGTGCATCTGAAGTAGCACCTGCTTGCTCTGTAACAGAATGCAATAGCAAAACCGAAGTACAATCCTCAAGAGAGTCATGTACAGCAGAACAGAACCATCCAAGTAACACAGAACCTTCAAATGATTTCTGTATTTCAAGAGAAAATCTGAGACTTAAAAAGATGAAACAAGATCAAGAACAACAGCGTGGCACAACTGCGTCAAGTACAACTAATTATATTAGTGTGGAATCCCACCAACAACTGTTGCAGACAGAAAATCCAATAAGAGTTGGTGACTTTCAAAGCCCTGGTCAGAAAAGAAAGTATCCAGAGTTGGTGGATGCAGGAGATTATTTGACCCCTCCACAGACGCCACCATCATTGAAGAATCTGCCATCTTCACTTTCTTGTGTTAGTCCTTTGAGGCAAAGCTCAAGTCAGACCCCAGAAGCTGTTGTTTCACAGCCATCATCATCACCAAGAAAACATGCAGAGTTCCCCTCGTGGTGCAGAGTTTGTAAGAGATCAATTCACAAAGGAGATGACATAACTTATTTTTATGAAGGCAGTATTAAGAGATGGATACATTTTGGATGTAAACCATCATCCACCTCCCAGAATTCAGAAGAGGATGACAGCGACGATGACATAGTTAAGATAACTGCTCAGCCAAAACAAGTTAAAATCAAATCGATGAAAGAGGCCATGTCAATGCTCGACGACGTCACCGAATACCTCACCGATGAAAATCTCACAGACATGGCAAACAACCTTTCCAGGGTCTTATCCAAAGTTCAGTCGACCTGGTTGGCCCAAAGACTGAATGCTGCCACTCAAACCAAAGTCACCGACTTTTTTAAATAA

Transcript

ANN10128-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6NVF4	DNA helicase B OS=Mus musculus OX=10090 GN=Helb PE=1 SV=2
Q8NG08	DNA helicase B OS=Homo sapiens OX=9606 GN=HELB PE=1 SV=2
P9WHJ0	RecBCD enzyme subunit RecD OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=recD PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008389 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13604 all species →	AAA_30	AAA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR050534 all species →	Family	Coronaviruses polyprotein 1ab	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43788 all species →	DNA2/NAM7 HELICASE FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0043139 all species →	Molecular Function	5'-3' DNA helicase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15254	HELB; DNA helicase B	EC:5.6.2.3	DNA replication proteins	ko03032	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.