Gene detail

Detailed information of ANN10200-RA in Montipora grisea

Genomic Location: Scaffold_7__1_contigs__length_59928471:23981251...23983551
NR annotation: MCP3891066.1, DDE-type integrase/transposase/recombinase [Desulfobulbaceae bacterium]
Species abbreviation MGRIS · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN10200-RA

ATGGCTGAAAACCACTATATGCCCCAAACAAAGGTCGATTGGACCTCCAACACCGCGTCTTCACAGTTTAAGTTGTGGAGGAAGGAAGTTGAAAGAATAATAGGCGGTCCTCTAGCATCAAGATCAGATCGAGTAAAAATAAATCATATATTTATCTGGGCTGGTGCTCATGCTGAATCTCTCATCGAGGCAAGCCTCAATGAAGATCCCGAGCTAAGGATCACTACACCAAGAGAGCTCCTTGATCAACTAGCAAAATGCCTCACACACTCTACCCTCTTTAGGGAAAAGCGAGAAGAATTCTACACTGTCCGACAGAAAATTGATGAAAACACGACCAGTTACTACTCTCGACTCCTGGATTTGTATCGGCAAGCTGAGTTTCAGGAAAATACAAACTTCCTTATTGTAGACAAGCTTATACATGGTTGCATAAGTAAGGATTGCAAACGAAAACTAATGGCGAAAGGAAAGGAAGTGTCTGTTAAAGATTGTTTGGAACTTATGCGAAAATATGAAGCTATAGAAGCCACTATGAAGAAGTTTGAAGAATCCAGTGATACTCAAGTTGATGCGTCATATGCACAAGACCCCACTAAGAAATCACAAAGAAATGGGTCTAAGAAATTTCCATACAGGCCTAAGTCAAAATCAGAGAGCAAGAGGTCAGGAGGAAAGAAATCCTGTATCTGGTGTACCGGATACGAGCATTCCCGAGACAAGTGCCCAGCCAAAGATGCAACATGTACATTCTGTGGCAAACAAGGACACTTTGAACGAGCCTGCCTCCAAAAGAAAGGGATAGACAAAGGTAAGAAGTCCAAGCACCAACTTGCTGTAGGCGTCGACCCTAACGAGGACAGCAGTGAATATGAGTATGACTTTGACTTAAGTGTTGTATCCATACATGCTGTGGACAATCAAAAGTCACGTGAAGTATTCGCTCCAGTATTGTTTCACCCAAAAGGCGACAACAGTCCATCCTATGAGATCAAAGGCAAAGTTGACACTGGTGCTATGGTATCGTGCATGCCGACTTCCATGCTTTCAAAAATCGGGCTGTCCAAGAAAAATCTAAAACCAAGCAGCGCCATTATCCGAGGAATGTCTGGAGCAGATCTTCAGAACTGTGGATTTGTGGACATCAGTGTCACCTCCAATGACATCACTGCCAAATCAAGATTCTATGTCACCAAACAGGAATGTGCTTTCATTCTTGGTCTTGGATTCTGCAAAGAATTCAAACTTGTGACTATTGCACCCATGTGCATACAACAAAGCATGCCATGCCATGTTGAGGCTGTACACATCACTGAAGAATCAGAGGCTGACTACGACAATCTTCAAAAGAAGTGGACGAAACATCTGCCACTTGGAAAGAAAACAGGTGATCCTTTGGAGGACCTAAAGCAGATCTTCCCTGAGACCTTTGATGGCCAGGTTGGTCTCTTTGAAGGTGAGGTCAGCCTTAAACTCTCACCAGAGGCAAAACCAGTTCAACTACCACCCCGTGCTATACCGCAAAGCATCATGCCACAGCTAAAGAAGGAACTAGACAAAATGGAACAAGAAGGAATCATCCGAGCCTGCCCAGAAACTACCGAGTGGGTACATAATCTGGTAACTGTTGTCAAAAAAGATGGAACCCTGCGTCTGTGCCTTGACCCAAGAAACTTGAATAGATACCTCATCCGCAACATCCACTACACTGCATCTTGGGAAGATGTTCAGCATAGTTTCAGAAATGGTCAATACTTTTCCACACTAGATGCCAAGAGCGGGTACTGGACCAAACAACTTGATGAGCAAAGCCAGCTTCTCACAGCATTTAACACACCATTCAAGAAGTACTGCTTTGTTCGCTTGCCCTTTGGATTGTCAGCATCTTCTGAAATCTTCTGTGAGCACATGGATCGAATCCTAGCTGGCATTCCAGGAACATTCCCATGTGCGGATGATGTTAAGATACAAGGGTCATCAGAGGAACGTCACGACATTCACTTGCTGGAGACTGTGGAAAAGGCATGCAAAGCAGGACTCAAATTCAATCCTAACAAGTGCTTTATTAAGAAACAGCAGATCGAGTACTTTGGACGTATTATCAATCCACAAGGTGTCCAGCCATGTCCAAAGAAAGTGAAAGCCATCACAGCACTTGCTGCGCCAACCAATAAGCAAGAGTTACAAAGCTTGCTGGGAACTGTGAACTTTATGTCTACATTCATCCCCAATTTGACAAAGAAGACCCATCTCATGCGTAGCTTGCTGAAACGTGACAGCCACTTTTGTATGGACCAGTGA

Transcript

ANN10200-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P0CT41	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1
P0CT34	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1
P0CT35	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000002 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR021109 all species →	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR036875 all species →	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984 all species →	PROTEIN CBG26694	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN10200-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.