Gene detail

Detailed information of ANN10293-RA in Leptoseris scabra

Genomic Location: Scaffold_8__1_contigs__length_51692913:7833940...7851946
NR annotation: CAH3016521.1, unnamed protein product [Porites evermanni]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN10293-RA

ATGGCGGCAATACACGCACTTGCGGCTTATGGCGATGATAGCGATTCTGAAGAGAATGAAAGCTCTGAAGAAGAAATTACGCCAGATCATACCACCCATCTTAGCTCTAAAGTCTCAATTTCACAACTGCAATCAAAGATTCAACTCAAAAGTGCACCGGAGGTCACTGCGAAGGAAGATGTTGGTGTCATAAGGCAGGTGGATCCTACAGCAAAAGAAGTCACCTACAATCCACGTTATGAGGAAATGTTCAGCCCTCAGGTTGGACCATCAAACCCTTTTAAAACAAGACAACAGAGTGCTCCAAAGAACACCCTTGCAGGATACGTTGAACCAGCTCACCTGAGTGACTTTACATTTGAAACACAAAGAAGAACTTTTACCAGCTATGGTTATGCTTTGGATCCAAGTGTTATGGGGGGAGCCAGCACAAGCGCTGACAGGTTTGTTGGTGATGCAGATAAAGCAGAGGAAAAAAAGGGTTTAACAATATTTGAAGCAGCAGAGGCACGGCCTGGTGACAAAAGAAAACGAGAAAAACCAGGTGATCCAGGAGACATTGAGGGATACAAAGGTCCATGGGCATCCTATGTTGATGAGTCTAAAGTCGCCAAACCATCTGAGGAACAAGCTGCCAAACTAGAAGAGTTTGAGATGACAAAGCAAAAGAGGAGTAAGAAAGAAGAAGATAAAAGTGTGGAAGAAAAGACCACGTTACATGTTCAAGACTCAGTGGATTACCAAGGCCGATCATATCTGCACATTCCACATGACATCGATATTAAACTGGATACAGATGAACCACCAGAGCGATGCTACTTACCAAAGAAACATATTCACACATGGACTGGACACACAAAAGGTGTTTCATGCATCAGATTCTTTCCCAGATCAGCTCATCTTCTATTATCCTGCAGTATGGACTGTAAGATCAAGGTAACCAACATCCTGAACTTGAACAATTCTCCTTATGCACTCACTCTTGAAAATCCTGACATTGAAGCAGCGCTGGAGTTTTATGAGAACGACCTTCCTTCTCCTCATGTGGTTGATGTTGAGCTCCTGCGATGGAAGAGAAAGTGGTGCAGCACTGAGGATGCCGACCTTCCCACCAGTGCAGTTCAGACACTCGCAGCATGCGATCGAGAGTTCTTTCCTAACATCCACACCTTGATCCGCATTTTGTGCACGTTGCCGATAACGTCAGCTGAATGTGAGCGCTCATTCAGTACACTAAGAAGGTTAAAAACATACCTGAAGTCGACCATGTCAAGCGAGCGAGAGTCTGGGCTGGCGTTGATGAACATCAATTACCACCGAGACATAAATATCGAGGAACTGTGGGAAGTTTATGGCAAAAGGCGGTGCTTGAGAACATTCATGGGTCACAGTAAGGCGGTCCGTGACATCTCCTTTAACAACACAGGCACACAATTCCTCAGTGCTGCTTATGACAGATATGTTAAACTTTGGGACACAGAAACAGGGGAATGTATTGGTCGCTTTACCAACCGTAAGATTCCATATTGCGTCAAGTTCAATCCAGATGAGGACAAGCAGCATTTGTTTGTTTGTGGTACATCGGACAAGAAGATACTAACGTGGGACACAAGAGCGAACGAAATAGTCCAAGAATACGACAGGCATCTTGGTGCAGTGAACACGATCACATTTGTGGATCAAAACAGAAGATTCGTAACCACGTCAGATGATAAAAGCATCCGCGTCTGGGAATGGGACATTCCTGTGGATTTTAAGTACATCGCTGAACCCAGCATGCACTCGATGCCTGCTGTTGCACTACATCCAAACAACAAGTGGATGGCCTGCCAGTCCATGGACAATCAAATTATGATATTCGGAGTGCTCAACCGTTTTCGTCAGAACAGGAAGAAAACGTTTAAAGGCCACATGGTTGCAGGCTACGCTTGTCAATTGAGTTTCTCTCCAGACGGAAGTTACCTTATTTCTGGTGATGCTGATGGGAAGCTTTGTATCTGGGATTGGAAATCTACAAAACTTTACAGCAAGTTCAAGGCGCATGACGCAGTGTGCATCAGTTGTCTGTGGCACCCCCACGAGACATCCAAGGTGGTTACGTGTGGCTGGGATGGATTGATAAAGTACTGGGACTGA

Transcript

ANN10293-RA

Protein

Uniprot

Gene family

Uniprot term	Description
Q9DC48	Pre-mRNA-processing factor 17 OS=Mus musculus OX=10090 GN=Cdc40 PE=1 SV=1
O60508	Pre-mRNA-processing factor 17 OS=Homo sapiens OX=9606 GN=CDC40 PE=1 SV=1
O43071	Pre-mRNA-processing factor 17 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=prp17 PE=1 SV=1

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05699	Dimer_Tnp_hAT	hAT family C-terminal dimerisation region	Domain	Interproscan
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032847	Family	Pre-mRNA-processing factor 17	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR008906	Domain	HAT, C-terminal dimerisation domain	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43979	PRE-MRNA-PROCESSING FACTOR 17	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0071013	Cellular Component	catalytic step 2 spliceosome	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0046983	Molecular Function	protein dimerization activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12816	CDC40, PRP17; pre-mRNA-processing factor 17	-	Spliceosome	ko03041	deepkoala