Gene detail

Detailed information of ANN10370-RA in Leptoseris scabra

Genomic Location: Scaffold_8__1_contigs__length_51692913:9858961...9875177
NR annotation: KAJ7394357.1, epithelial cell transforming sequence 2 oncoprotein-like [Desmophyllum pertusum]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN10370-RA

ATGTCAGCAGGAATACCTCGAAATGCCCGACCAACTTCTGTAAATAGCAAGAAAACACGAAAAACAGTGAAAGAGAACGAAATTGTTGGCGCCAAAGGAAACGCGAAACCCCGAATTTCACCGTCTGTTATCGATCATGGATTCCACACCGATAAATATAAAACACATTACAGTGCTTGGACCCCAGTTATAAACAGCGCTTCAAACAGTCAAATTTTCTTGGAAAGGCTAGATCTCATAGGACACTGGTTCTCTATGTGGACAGATGCCCAACGAAAAAAATTCCTAACCTTCATCCTAAAGAAGTGTACAAGATCCCAGTTAAGATTTGTCAATGAAGGTTGGTTCAAGAAGCAGCTTCCGATCCTCCACTTAGACTTTACAAGCGTTCTACCACGCTTCATATCTACCTACATATTATCCTTTCTTGACCCGAGAAGTCTTTGTCGTGCAGCTAAAGTATCTTGGCACTGGAAATTTCTAAGCGAGCAGGATGTGATCTGGATGCCAAAGTGTTTACGGTTTGGATGGTATTTGCCTTATACGCCAAACAGCAGGGAAAATGGATGTTGGAAACATCACTACATTATGTGCACTGGTTCTCTTGACATGGAGGCTCCATCCAGGATGGCGGAAGCGTATGGCCAGTTTGCTGACAGCACCACCAAAGTGACCCAAGAAAAAGATGGAAGACAAAAAGCTGCAGAGAGAAAGAAAAGGACCAAAGAGGCCACATACTACAGACAAGAAACACGTCGTCCACCCTGGCTGGACCCTGATCCCAGCCCTGCTGACTTAGAGCAAGCCAGAAAGGCGCTGCTTTATGAACATAACCCAAACCAGCCTCACTCCCCTGACCGACTTAGAGCTGAGAGACTGGGACTGAGTTCCAGACCTCTTCACAGAAGATCGCATACAGCTCCTGCGCACATGCGCACAGAGAAAGTGAGCGTGCCCAAGATAAACGACGGTCACGATGTTAACGGCAACATAATTGAAGAAGGAAAGGAGCCTGTGCACTCATCCAAACTGACCCTGACAGAGGCATTAGCTATTGAATCTGGCGTTGATGAGTCTTTGGTTGAACAGCCGTGGTCCAAGCCAATTCCGACATCACCTGTACGAAGGCAAGACTTGACTTTTGGTATTCATCCCAGCGCGCATGATTCAGTGTTGTCAGTAAGAAGCACACAGGATCTTCGAAGTTGCCCAAGTCCGGCGGTGATATTTATCTCTTCTGAAATACCAGCTTGTGAGTTGTTATTAGAAGCTGTGATGTTTGGTGTCATTGCAATCCCGTACGAGTACGAAGGTACAACGCTAGACGCCTTGATGGAGAAGTTAAGGCTAGCTCTGCAAGGAAGACAAGCGAAGAGCATAGGTGTCTTTGCTTGGGGAGAATCCGGTACAGTGCGCCTTGTGAAAGGTCAAACGTTATCGGAGAAGACGATAAACCAACCGAATATGCGACACTTCTGGGAAACTGTGACTACAAGTGTTACTGCGCGAGAGTCTGGAGGCCATGTCGACATCTTTATACCTCTGGTAGAAACAGAGCAAGGAATGGATCTGTTGGCTCAGCTTGGTATATTAACAGACATGCAGTTTTCATGTCCCACTGGGATGACGGGATCATTTGCTAGAGTTGAAAGTGAGTGGCTGTTTGTTCCTAACAGTGTCACACCTCCTGCTCTGTATTTTAATATGACAAAACTTGGCGCTTGGTCACAAACCGTGGGCTATATTGAGGAAAGTGTGGATGTTGTGAAAAGGAATCTTAACTCTTTCTTCAATGAAGAACAAAGGAATCTAGCCAGGCGTCTTGTTGGACAAATCACGTTCGAGGCGTTAGGAATGTGTGAGGTCTTCAAGATCTCGGAAGTTGCTTCTGCACTGGTGGATGCCGTCATTTCTCTGGGAAGAAACAACGCATCGAGAAGCTGGAGTGATCCAATCCAGGAACTTGTCGATTATCTACAGAATCATGCCCACAAAGGCAAAAGATTGAAGAAAGTTAAGAAAGCAACGGTAAGTTCTATTCTGTTCATTGTTAATGGTCCATGTAAAGCTACTCATGAGTGTATTTCATAA

Transcript

ANN10370-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q008S8	Epithelial cell-transforming sequence 2 oncogene-like OS=Homo sapiens OX=9606 GN=ECT2L PE=1 SV=2
Q8IX29	F-box only protein 16 OS=Homo sapiens OX=9606 GN=FBXO16 PE=1 SV=1
Q9QZM9	F-box only protein 16 OS=Mus musculus OX=10090 GN=Fbxo16 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002132 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12937 all species →	F-box-like	F-box-like	Domain	Interproscan
PF14252 all species →	DUF4347	Domain of unknown function (DUF4347)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001810 all species →	Domain	F-box domain	Interproscan
IPR036047 all species →	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR025592 all species →	Domain	Domain of unknown function DUF4347	Interproscan
IPR052805 all species →	Family	GEF and Ubiquitin-Proteasome Regulators	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46857 all species →	EPITHELIAL CELL-TRANSFORMING SEQUENCE 2 ONCOGENE-LIKE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN10370-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.