Gene detail

Detailed information of ANN10509-RA in Leptoseris scabra

Genomic Location: Scaffold_8__1_contigs__length_51692913:13920561...13945053
NR annotation: XP_044170423.1, unconventional myosin-IXAa-like [Acropora millepora]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN10509-RA

ATGGCTGAGAGGGGAGCAACTCGCCATCACAAGATAAGAATATTCGCTGGTCAGTTGTTAGCCGCGGTGCAATCTACTGTTGTTTCAGTAGCAGAGAGCGCGACAACTAAACAAGTATTACGGCTAACTCTTGGCAATCTTGACATCCAAGGCAGGCCAGACAATTTTGAATTGGTGGAGGTCTGCTATCGAGATAGTATTTTGGACAACGACAGCGAACGAGTTCTGAATTTCTCGGAGCACCCTGTCGAAGTTCAACGGGGTTGGAGAAAGTTGCCGCCGAAGATTCGGACAAAATATCGTCTCTTCATTCGAGAAAAAGTACACGAGGACGATCAAGAAAAGCCGGAATTACTGAGACACAACTGGATGGATTGCCACGAAAGCGTAAGGAATTGTCAGGAGTTAGACTTCGATCTGGAATCCAAGCTTCCTGATGACGACCTCTGTCGTCTACCGACGTTGTCGGAGCAAACGTTGCTCGAACATCTTGAAAGGAGGTTTTCTCAAGGAAGAATATATACTTATGTGGGGGAAATACTCATTGCTGTGAACCCGTTTCGCTTTTTTCCAATGTATAATCCGAAGTTTATCAACGCTTACACCAACCGGAACTTGGGATCTCTACCCCCTCATATTTTCGCTATCGCCGACGTAGCCTTCCATCGCATGTTGCGAGAGAAGAATAGTCAGTGTGTAGTGATTAGCGGCGAAAGTGGATCTGGAAAAACCGAAAGCACGAAGCTTTTAGTTCATCATCTCACGGCTTTGGGATTAAAAACACAAGCTTCGAATTCATCCGTAGAAAAGACTATTCTCGGGGTGGGACCGGTTTTGGAGGCATTTGGAAATGCAAGTACAGCATACAACAATAATTCCAGCAGGTTTGGGAAATTTACACAGATCAAGTTTAGAGAAGATGGAGCTGTCTGTGGAGCTGCACTTAGGAAATATCTTTTGGAGAAGTCTAGAATTGTCTCACAAGCGCCATCAGAAAGGAATTACCATGTGTTTTACTATTTGCTTGCTGGAGCAAGTCCTGAGGACAAAGAGGAACTCCACCTCACAAAACCAGAGGAGTATTTTTATCTTAATCAGAATGGATGTTACTCCCTTGAAGGGATCGACGAGGCTTATGAATTTCTAAGACTACAGAAATCCATGGAGATGAGACATGGCCATGAAGAAGCTACCATCAAAGACAGTGAAGAATTGAATATAGTCTCTGATCTTCTCTCGGTTACTAGACGAAATGTCGTTGAAGTTTTGACAACCAAGAAAACTAAAACAAGGAATGAACAGTTTATTGTACCATACAAATATGAAGAGGCCTTAGCCACCAGAGATGCAATGGCCAAAGCCCTGTATGGAACACTGTTTGACTGGATTGTTTTACAAGTTAACCATGCACTGGCTGTCAAGCAGTCTAATGGATGCTCTATAGGAGTTCTGGATATTTTTGGATTTGAGGATTACAGGCACAATAGTTTTGAGCAATTCTGCATCAACTTTGCTAATGAGAAGCTGCAGTTCTACTTTAACAAACATGTCTTCAAACTGGAGCAGGACGAATATGTTTCTGAAGGAATCGAGTGGAGGAATGTGGACTTTGTAGACAATGCAGCCTGTTTGGAATTGATCTGTGGCCGGCCAACAGGCCTGTTAAATCTGATTGATGAGGAGAGCAGTTTTCCTGGTGCCACGGAAACTTCTCTGCTAGACAAACTGAACAAGAACCAGTCAGGCCACAAGTATTATGAACAGTCTCTCATCGAGCAGGCTTTCGTCATCAAGCATTATGCCGGAAGTGTCAAGTACAACATTCAGGGGTTTTTGGACAAAAACAGAGATCTCATGAGACCAGACATTTTAAGCGTTCTGAAGAACAGCAATTCAAGATTTGTGAGAGACTTACTTGGAGCTGATCCTTTAGCTATGTACAGATGGTCGATTTTGAGGGCTTTCTTCAAAGCTGTTCATGCGTTTAGAATGTCTGGCAGGGAGTATCGTGCAAGTGGGAAAGCAGATGATCGTTCAGCAAGCCGGAAAAGAAAAATGGTTACAGTCCCAAGAGGATCAAGATTGAATGTCTTGGATCCTGAAGAAGGACCTGTTATGCCAAACAGTGAAACAGCTTCTCTGTTTAGGAAAGCTACCCGCGTGATCAGGAGAATGCACAGCAATAAACAAACAACAAAATCTTCTCTCAATCGCCTCGTGGAAATCTTGGAAGAGGCTCAACCTTTCTTTGTTCGCTGCATCAGATCCAACGCTGAGAAGGCACCTCTGACATTCGATCGTGACCTAGTGGTTCGCCAGTTGAGATATACAGGAATGCTGGAGACAATACGAATAAGGACCTTAGGCTACCAGTGGAGATTTACGTTTGAGATATATAACGAAGAACGTTCCACCAAGAGCGTTATCGCTCTTGCTCGGGCACTAGAAGGACCGAATACACTCCTCAGAGGTACGACATTCCAGTTAATTTGTTCTGTCATGGGTTGCTCCGCAAGTCGCTCCCTTGCTCCCCTTTCGCCTGGCGGTGTAACTGCTGTTGAAGACATTATTGAGTCCAGAGAAGAGTATCTGGAGAATGCCCGCGCCGTCTTGTCAAAAGTGCGAATCATTCCTGCCTTACAGAGGAGGAGGGCCAGCTCCGTTGGGCTACCTGAAGAAGACGGTGTGTACTGGGTGTACTGGCGACCCGAGCCGGAAGAAAACCAAGTGTTGAAAATCAAGCAGGACGACTCTCGAGCGAGTTCTGAACGAATACATTACAGACGAATCTTTCAAACGGTCACTCTTCGGGATCGCATAACTGAGAACTGA

Transcript

ANN10509-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
E7EZG2	Unconventional myosin-IXAa OS=Danio rerio OX=7955 GN=myo9aa PE=3 SV=1
Q63358	Unconventional myosin-IXb OS=Rattus norvegicus OX=10116 GN=Myo9b PE=1 SV=1
Q13459	Unconventional myosin-IXb OS=Homo sapiens OX=9606 GN=MYO9B PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002346 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00063 all species →	Myosin_head	Myosin head (motor domain)	Domain	Interproscan
PF00788 all species →	RA	Ras association (RalGDS/AF-6) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR046987 all species →	Family	Unconventional class IX myosin	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR001609 all species →	Domain	Myosin head, motor domain	Interproscan
IPR000159 all species →	Domain	Ras-associating domain	Interproscan
IPR036961 all species →	Homologous_superfamily	Kinesin motor domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46184 all species →	UNCONVENTIONAL MYOSIN-IXB-LIKE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000146 all species →	Molecular Function	microfilament motor activity	Interproscan
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0005884 all species →	Cellular Component	actin filament	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan
GO:0003774 all species →	Molecular Function	cytoskeletal motor activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016459 all species →	Cellular Component	myosin complex	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN10509-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.