Gene detail

Detailed information of ANN10529-RA in Leptoseris scabra

Genomic Location: Scaffold_8__1_contigs__length_51692913:14311547...14345995
NR annotation: CAH3126177.1, unnamed protein product [Porites lobata]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN10529-RA

ATGGATTTCGAAGAAGATGAGGAGAGTGGGACATTCACACTGCGAATAAAGTCGCGGTCTGATGAACATGAGGGCACACAAAAGAAAACATTCACAAAATGGATAAATGCGCAACTAGCCAAGGCTGGTACTGGTCAGCAAGTTAAAGATTTGTTTGAGGACCTGAAAGATGGAACAAAGCTGTTACTGTTACTGGAGGTTCTTTGTGGAAAGCGAATTAGAAGTGAGAAAGGTCGCACACGTGTCCATTTTTTGACCAACGTGGACAATGCCCTCAGGGTTTTGGAGCAAAACAATGTGAGACCTGTGAATATCAGCAACGATGACATTGTTGATGGCAATCCTAAACTTACTCTTGGTTTGATGTGGTACATCATCTCACATTTCCAGCTACAACTATTGCTCAAGAATCTGATGCTGGATTCTGGTTCTGAAACACCAGAAGAGAAACTGTTGGCTTGGTGTCGACAGTCTGTACGAGGGTATGATGCAGTAGAAGTAAAAAACTTTACCACAAGTTGGAGAGATGGACTGGCATTCAATGCCTTAATCCACAGATACAGACCCCATCTGTTTGACTACAGTGATCAGCTGGATATGAAGCCTGTGGATTGTTGTGAGCATGCTTTTGCTGTCGCTGAACAGTTTCTTGATGTGGACAGGCTTCTGGACCCTGCAGATGTCGTTCGTGACCGCCCCGACAAAAAATCGATCCTAATGTACGTTTCCAATCTGTACAACAAGCTGGCTCCAGGCGTGTCTCACATGACCGTGCTAAGGAACGGCTCACGCACCGTGGAGAAGTCTGAGCATACGCATACGTCCGTGTCGACCAAACGGACTGTAAGCAGCACGTATCACACGGAACACACGGTGAAGCACGTGAAGAAAGGATATGACGAGAGAGAGCCTGTGAGATATGTAACCACCACAAGTACAACAGTGAAGGAGCCGCCCATACAACACTCGGCTATAACAACTGTGGTTGAACGTACTCAGGAAGCTGAACGCCCTGACTCCATGGTGAGCGAAACCAGCAGTGTGCGTGACTCAGTCGGATCATTCAAGGAGTGGGAGGACTACAACGCCGCTTTACAAGATGTGCTGAACTGGCTGTCACAGGCCGAGAGGACTCTGGAATCACAAGAACGAATTTCGGATGATGTTGATGCCGTGAAGAAGCAGTTTCACGGACATGAGGACTTCATGATGGAGCTGACGTCACACCAGTCAGATGTGGGCGCGGTGTTGGAGTTTGGGAACCAGTTGATCAGCGAGGGCCTTGTGAACGAGAAAGAAGAGAATGAGATTCGAGAGCAGATGATCGCACTTAACGATCGATGGGAAGCGCTTAGAATGGCGGCAATGGACAGACAGACAAAACTTCACGTGCAGTTGATGGATCTCCAACAGAAGCAGATTGATGAGCTCGCTGATTGGTTGACCGTGGCAGAGCAGAGAATCAACAGTTCAGAAGTTATCGGTTCTGACCTCGACACCGTGCGGCGTCAAGTCGAGGATCACAAGTTTTTTCAAGAAGACCTGGAGAAGCAGCAGCAGCAGGTGAACTCTCTGACCCACATGGTTGTTGTGGTGGATGATAGCTCCAATGAAAGTGCTACCGCTGACCTAGAAGAACAGCTTGCGGTTCTTGGCGAGCGTTGGTCAAATGTATGCAAGTGGGCAGAACAAAGGTGGAGCATGTTACAGGATGTGCTAAAGAGTTGGCAGGAGTATAGAGAAGAAGAACGAAGGCTTTCCAAATGGCTCTCAGAAAAGGAAGCACAGATTGATGATATGAAGCACATTGATTTGGGCGACATTGAGGTTGTCAGAAAGGGTCTCAAAATGTTCGTGAACATGGAACAGGAGATGGAAGCCCAACAAGCGACGTTCGGAACGTTCAACCTCGCCGCCGAGAAGGTCGCGGAGAACTTGGACGAGAATTCACCTGGTGTGGCGGACATACAGGACAAAATGGAGGAGTTTAATGACCGCTGGAATAAAATAACCACTGAAGTGTCCACTAAAATCACCCTGTTGGAAGGTTTGGAGTTAAAGCTGCAGCATTTCAATAACGACGTCACTGATAAGACCCAATGGATTACTGACACTGAGACTCTGCTCAAGTCACCCGCCTTCAACTTGGATGACGAAAACATTTCCAGCGAAAAAGTGCAACAACAGAACGAGCTTGTAGAGTCTCTCGACAACGCAAGAAGACAAAGGAAACCAAGCGTGACCGCCATACAGAAGAAAGGCGAAGAGTTAATTGAGCACTGCCGTAACCAAGGCAACATACCAGTGTCTCTAGAACAGTCGCTTAGCAACTTCACAGACCGGTGGAACTCCGTCGGCGCTTTAATTGACGACCGCAGACATAAAGCACAGCTGGCGCGTCGCCGACGTGACGTACAGGACTTGATGTCTACTTTGGAAGCTGTACTGAAAGACGTGGAGAGAGTAGTTAACAAGTTTACTCCAGATGTGCCTGAAAACGATTATGAAATGAAATCACAGTTGGAGCTGAGTAAGTGCCCTGATAAGTTGGGGGATAAGTCGCAAGAAACATCGCACGGCGTATCATATCTTGCAAAGGACAAAACCAGGTCAGGTCAAGTTGCCGCAACGTTAAAACTTGATGAGTTGGTAACCAATGAGGTTTCCCTGATTAAAGTCCGAGAACTTTCACGCAATCTCAGCAAGGAAGACAGGCACACCCCTCACCTCCAGGCAGGGGTAAAGCGCATCGACGACCGCTGGTCAAAAGTTCTGGCGAGTCTGGAAGACAGGCAAAAGCAGCTGACGGCCGCGCTGGAGTCTGGGCCGCCAAAGCAGTTCCTTAGTACCATGGATGCAGTTCTGTTGAAGATTAAAAACATGGAGTCACAACTTGGCTCGGAGTTTCTCATTTCTGATACAGCGTCGCTTGAAGACCAGTTACAGAAATACAAGCAACTGCAAGCCAGCATGGCGGAACAGCAAAGGAATATGGACTATCTTAACAGCACTGGGGACAAGTTTGTTAAATCTCTTCCACGACAGAAGTCAGAACAACTCAGATCCAAGCTGGCGGACCTGAATGATAAGTGGCGAGACATCAACCTGCATGCAGAAAAACGACAGAATCAAGTCGGAAAGGCTGTCAATCAGACTCGCCAGTTTACTGAGCAGATTCGAGGCCTGTTTAAATGGATGACAGAAGCCAACGACTTCCTCAAAGATCAAGAGCCAGCAGCCGGAGACCAAGAGACGCTGGAAGCTCAGTTAGATCAGAGCGAGGCGTTACAAGGAGATGTCACCAAGCTGCAACGCAAACTGGACTCGCTGAACGAGACCGGGGCTTATATGATCAGCAAAGCCACACCCGCGTTCGCGGACAAACTGAGAAAGGAACTGGAAGACTTGAACAGTCGCTGGGACGAGCTCGTCCGCGTGGCGCTCCGAGTAAAGGATAACTTGGTAGCGTCACTTGAGAAATACCAAAAGTTGACTCACGACATGAAGGAGATAGGCCATTGGATCATGCAGGTGGAGCGGTCTATTGCTGATGATGAGGGCGACATCACGAATGGAGAAATTACACAGGAAAAGGTGGATCATTACAAGGAGCTCCAGCAGGATATCTCAAAACGGGCTCCGGTCGTGGTGCGAATCAACACAACAGCCAATCAGATGATCGAAAACACAAAGCAGGGGAGTCCAGCAGTCCTGCAGGAGAACTTGAAAAAGATGAACGCGGATTGGAACAGGCTCAAAACCAAGATTGCACAGCGGCAACACGAGTTTAAGCAGACGCAGTTGGAGCTGGAGCAGTTTAACGTGTTGATTGAGCGCGATTACAAGCTGATGGGAGAGCTGGATCGAGTGGTGGAGAAGAGCTATCATGTGCTTGAAGGAAGTGAATCTGAACTGGAGGATGCCTTGAGGAACCTAAACCGCCACGCGGCGACCATCAAAGAAAGCGGTACAGGCTCGGTCCCAGATCTCGCCAGGCAGCTCACAAGCAAGAGAATCGCTGTAACCATTGTCAGGAAACAGATGGATTTGTATGAGGAACGTTTGGCTGACGTTCGTGGAAAGGTTGACAAAACGCGGCAGGTTCTTGAAGGAGAAATTCAGCGGCGGCTACAGCTGAAGAAAGACTTGGAAACGATTCGAATGTGGGTGGTGAAGATTGAAGTGGTCATCACCTCTAAACTGAGCAAGCACGAGGAGATAGATGAAAGAGAAATAAAGGCCCTAGAAGAAGAATTTTCCATGAATGAGTCGCTGATGAACTCAGTAGAATCCACTTGCCACGAACTGAGTGAAACTCCAAAGGGTTCCGCCTACCTCAAGATGAAAAAAGAACTCGAGCAACTACGAACCAAATGGGTGACAATTCACACCAAGTTTGTAGAGCTCAAAGAACAGCCGGGCAAGAAACTGGAAGCCGAATTTGACACTCTTCACGGACAGACGCTAACAGACTTGGACAAAGTCCATCGCGGTGTTAAGAAACTGAAATTAGAGTCTTCAGAACCGAAGAATATCAAGAGCCTGTTGGATAAATGTGCGTCGTACAAAGATGAGCTGTCCACAATCAAACAGGACTTGGAGCAAGTCCGGAAGCTTGGGTACCAGATCATCGAGAGAGTGCCCGAGGAGAAGAGGACTGGAGTCGAGAAACGTGTGGAGGAAGTGGTTCATGAACACAGAGAGCTGGAGAAGAAACTGCGAACCAAGGAGGAGGCCTTCCGCGAAGCTTTACCGTTAGCCGAGAGACTTGAGAACGATATGAGCAATCTGGAGAGTTGGCTAGACGACAAGACAAATGAAGTGAGGAAGAGAGAGGAAGCGGGATTTCCTGAAGACGTGGATGCCGAGATTAGATGGAACAAGTATATCTTCATTGGAATTATCCCCGTTAGTGGATCCCCTTGGATCCCCTTGGATCCCCTTAATTAA

Transcript

ANN10529-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P11533	Dystrophin OS=Gallus gallus OX=9031 GN=DMD PE=2 SV=1
Q5GN48	Dystrophin OS=Sus scrofa OX=9823 GN=DMD PE=1 SV=1
P11530	Dystrophin OS=Rattus norvegicus OX=10116 GN=Dmd PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001553 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00307 all species →	CH	Calponin homology (CH) domain	Domain	Interproscan
PF00435 all species →	Spectrin	Spectrin repeat	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018159 all species →	Repeat	Spectrin/alpha-actinin	Interproscan
IPR036872 all species →	Homologous_superfamily	CH domain superfamily	Interproscan
IPR001589 all species →	Conserved_site	Actinin-type actin-binding domain, conserved site	Interproscan
IPR001715 all species →	Domain	Calponin homology domain	Interproscan
IPR002017 all species →	Repeat	Spectrin repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11915 all species →	SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0030018 all species →	Cellular Component	Z disc	Interproscan
GO:0030036 all species →	Biological Process	actin cytoskeleton organization	Interproscan
GO:0030054 all species →	Cellular Component	cell junction	Interproscan
GO:0030864 all species →	Cellular Component	cortical actin cytoskeleton	Interproscan
GO:0042995 all species →	Cellular Component	cell projection	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan
GO:0055001 all species →	Biological Process	muscle cell development	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN10529-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.