Gene detail

Detailed information of ANN10564-RA in Leptoseris scabra

Genomic Location: Scaffold_8__1_contigs__length_51692913:15061204...15075068
NR annotation: CAH3146625.1, unnamed protein product [Porites lobata]
Species abbreviation LSCAB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN10564-RA

ATGGCAGACAAAGTCTTGATCATTGGCGGAGGAGGCAGAGAGCACGCCATTGCATGGAAACTCGTTCAGTCAAACCATGTTGGTAAAATACTGGTTGCACCAGGCAATGCAGGAACGGCTAGCCTTCAATCGCAAGCGGAGAACGTCTCATCTTCCGAACTCGATCAAAACAACAACGAAAGCGTTGTAAAATACTGTGTGGATAACAAGGTGGACTTTGTTATCATTGGTCCCGAAGCGCCTCTAGCAAATGGCCTGGCAGACTCTCTCAGAGATAAAAACATTCCGTGTTTTGGGCCAAGCCGTGCTGCTGCGAGAATTGAGTCAAGTAAACATTTCGCCAAGGATTTTATGCAACGACATAAAATTCCCACAGCGCGCTGGAAGGCTTTCACAGATGTCGAGGAAGCGTGTAAACATATTGAATCGGCTGATTATGAAGCGCTGGTGGTTAAAGCTAGTGGTCTGGCGGCTGGTAAAGGAGTTGTTGTAGCTGACAGCAGAGAACAGGCTGTAAAAGCTGTCAGAGATATGTTGCAGGATAAGATTTTTGGTGAGGCAGGTTCCACAGTGGTAATAGAGGAAAAGTTAGAAGGAGAGGAAGTTTCTGTACTATGTTTTACTGATGGAAAAACTATTGCTGTTATGCCACCAGCCCAAGATCACAAGCGCTTGTTAGACAATGATCAGGGACCCAATACAGGGGGAATGGGGGCATATGCACCCTGTCCACAGATATCCCAGAAACTCAAGGAAGAAATTGCCAGGGACGTTCTTCAAAGAGCAGTTGATGGCTTGCATGAAGAAGGCTGTCACTTTGTAGGAGTTCTGTTTGCCGGCATGATGTTAACGCCTCATGGACCCAGAGTTTTAGAGTTTAATTGTCGTTTTGGGGATCCAGAGACACAAGTCATTCTGCCACTCCTGAAGAGTGACCTTTATGCAACCTTGATGGAATGTGTGAATGGTGACCTAAGCTTGTCACTTCCTTCATGGCACACTGACAGATTTGCAGTGGGTGTGGTTGCAGCAAGTGGTGGGTATCCAGGTGCTGTGAAGAAAGGATGCGTCATTCATGGATTGAAGGACTTGGAGAGCAAAGACAATGTAGTGGTGTTTCATGCTGGGACGGCCATTAAGAAGGCTGAAGATGGTGAAACAGTGGTGACATCTGGTGGAAGGGTGATAGCCGTTGTTGGTATGGCACAGAGAATAGAGGATGCTCAGAAAACAACCTATGACAGCATCAAGAAGATTCACTTTGATGCTATGCAGTACAGAAATGACATTGCATCTAGGGCTTGTAGGACAAAAGGCCTGACATATTCAGATGCCGGAGTGGATATTGATGCAGGGAATTTGTTGGTCAATGCCATCAAGCCACTGGCTGCATCGACAGCTCGCCCAGGTTGTAAAGCAGATCTTGGTGGGTTTGGAGGATTCTTCGATCTCAAGGCTGCAGGCTACAAAGACTCTTTACTTGTCAGTGGCACAGATGGAGTAGGAACTAAACTCAAGGTTGCACAGTCTGTTGGTATGCATAGTTCAGTGGGGATTGATCTGGTTGCAATGTGCGTGAATGACATCCTTGCTCATGGTGCAGAACCCCTTTACTTCTTAGACTACTTTGCTACTGGCAAACTGGATGCGGGAAAGGCAAAGGAAGTGATTGTTGGTATAGCGCAGGGCTGTTCAACAGCTGGGTGTGCTCTTTTGGGAGGTGAAACAGCAGAAATGCCAGGGATGTACTCATCAGGTGAATACGACATTGCTGGATTTGCTGTAGGTGCAGTGGAGCGTGACAATGTTCTTCCTCTATCACAGAGCATTAAACCAGATGATGTTGTTATTGGCTTAGCATCGTCTGGTATTCACAGCAATGGCTTCAGTCTAGTAAGGCGAATCATTGATGAATCTGGATTGAGCTACAGCTCGCCCTGTCCATTCTCTACGACTGAAGGGTTACAGTCAGTTACTAAACTCGGCGAAGCTCTTCTTTCTCCCACACGAATTTACTGCAGGCCTGTGCTGCCGTTGATGAAAGATGGCAAAGTCAAGGCTTTTGCTCATATAACAGGGGGAGGCCTTATTGAAAACATTCCACGTGTCCTCCCCCCTGGGGTCGGAGTGTCAGTAGATGCCAATTCATGGATTATGCCCCCTGTATTTGGTTGGATTTTTGGCCAAGGAAATGTTCCCACACAGGAAATGGCAAGGACATTTAACTGTGGCATAGGTGCAGTACTCATCGTAGAAAAAGATGCAGCCGCAGCAGTTATGGAGCATTTGAAAGCATCTGAAGAACAAGCTTGGATTATTGGGAAAGTTGTTCAGCATGTGAGCAGCGAAAGAGTCGTCATTAGTAACCTTGAAGAAGCGCTTTGCCAGTCTGCATCAAAAGCAGACATCAAATTTGAAGACGTCGCCAACAGATCTGTGAACGGTCCTGTTAAAAGAGCAAAACTAAGCAATGGACTGACGGAAAAACAACAAAACAGCCAGGGGATGAAAGTTGGTGTTCTTATCTCGGGTTCAGGAACAAACTTGCAAGCGCTGATTGATCAGAGCTTGCGGCAGGACAGCAGTGCTAAGATTGTGCTGGTGATTTCCAATGTACCTGATGTCCAGGGTTTAAAGCGTGCAGAGGCGGCTGGCATACCTACTAAAGTAATCAAGCACAAGGATTTCAAAAGCCGTTTGGATTTTGACATGGCCGTACATGCGGCGCTGGAGCAAGCTGGCGTGGAGTTGGTTTGTTTGGCGGGGTTTATGAGAATCGTTACTGGAGAGTTTGTTCGCAAATGGAGTGGCCGGTTACTGAACATCCACCCTTCCTTGCTGCCTTCGTTCAAGGGAATGCATGCCCACAAGCTCGTACTGGAGGCTGGAGTCTGCATAACAGGATGCACAGTTCATTTTGTCGCGGAAGAGGTTGATGCTGGGGCAATAATAACACAAGAAGCAGTTCCCGTACTCAACGGAGACACAGTAGAAACACTCCAAGAGCGAGTGAAATGCGCAGAGCACAAGGCCTATCCACGAGCCATGGAGCTACTGGCGAGTGGCAGGATCAAGCTTAATGACGAGAACAAAGTAAAGTGGATGTGGTAA

Transcript

ANN10564-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P21872	Trifunctional purine biosynthetic protein adenosine-3 OS=Gallus gallus OX=9031 GN=GART PE=1 SV=1
Q64737	Trifunctional purine biosynthetic protein adenosine-3 OS=Mus musculus OX=10090 GN=Gart PE=1 SV=3
P22102	Trifunctional purine biosynthetic protein adenosine-3 OS=Homo sapiens OX=9606 GN=GART PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002833 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02844 all species →	GARS_N	Phosphoribosylglycinamide synthetase, N domain	Domain	Interproscan
PF01071 all species →	GARS_A	Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain	Domain	Interproscan
PF02769 all species →	AIRS_C	AIR synthase related protein, C-terminal domain	Domain	Interproscan
PF02843 all species →	GARS_C	Phosphoribosylglycinamide synthetase, C domain	Domain	Interproscan
PF00551 all species →	Formyl_trans_N	Formyl transferase	Domain	Interproscan
PF00586 all species →	AIRS	AIR synthase related protein, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020562 all species →	Domain	Phosphoribosylglycinamide synthetase, N-terminal	Interproscan
IPR004607 all species →	Family	Phosphoribosylglycinamide formyltransferase	Interproscan
IPR036676 all species →	Homologous_superfamily	PurM-like, C-terminal domain superfamily	Interproscan
IPR011054 all species →	Homologous_superfamily	Rudiment single hybrid motif	Interproscan
IPR011761 all species →	Domain	ATP-grasp fold	Interproscan
IPR020560 all species →	Domain	Phosphoribosylglycinamide synthetase, C-domain	Interproscan
IPR004733 all species →	Family	Phosphoribosylformylglycinamidine cyclo-ligase	Interproscan
IPR001555 all species →	Active_site	Phosphoribosylglycinamide formyltransferase, active site	Interproscan
IPR020561 all species →	Domain	Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain	Interproscan
IPR010918 all species →	Domain	PurM-like, C-terminal domain	Interproscan
IPR016185 all species →	Homologous_superfamily	Pre-ATP-grasp domain superfamily	Interproscan
IPR020559 all species →	Conserved_site	Phosphoribosylglycinamide synthetase, conserved site	Interproscan
IPR037123 all species →	Homologous_superfamily	Phosphoribosylglycinamide synthetase, C-domain superfamily	Interproscan
IPR000115 all species →	Family	Phosphoribosylglycinamide synthetase	Interproscan
IPR036477 all species →	Homologous_superfamily	Formyl transferase, N-terminal domain superfamily	Interproscan
IPR013815 all species →	Homologous_superfamily	ATP-grasp fold, subdomain 1	Interproscan
IPR002376 all species →	Domain	Formyl transferase, N-terminal	Interproscan
IPR016188 all species →	Domain	PurM-like, N-terminal domain	Interproscan
IPR036921 all species →	Homologous_superfamily	PurM-like, N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10520 all species →	TRIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN ADENOSINE-3-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004637 all species →	Molecular Function	phosphoribosylamine-glycine ligase activity	Interproscan
GO:0009113 all species →	Biological Process	purine nucleobase biosynthetic process	Interproscan
GO:0004644 all species →	Molecular Function	phosphoribosylglycinamide formyltransferase activity	Interproscan
GO:0006189 all species →	Biological Process	'de novo' IMP biosynthetic process	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0004641 all species →	Molecular Function	phosphoribosylformylglycinamidine cyclo-ligase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006164 all species →	Biological Process	purine nucleotide biosynthetic process	Interproscan
GO:0046084 all species →	Biological Process	adenine biosynthetic process	Interproscan
GO:0009058 all species →	Biological Process	biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11787	GART; phosphoribosylamine--glycine ligase / phosphoribosylglycinamide formyltransferase / phosphoribosylformylglycinamidine cyclo-ligase	EC:6.3.4.13 EC:2.1.2.2 EC:6.3.3.1	Antifolate resistance	ko01523	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.