Genomic Location: Scaffold_8__1_contigs__length_51692913:15446245...15458978
NR annotation: CAH3146673.1, unnamed protein product [Porites lobata]
Species Leptoseris scabra · all data for this species · gene families
| CDS |
| ANN10582-RA |
| Transcript |
| ANN10582-RA |
| Protein |
| ANN10582-RA |
| UniProt accession | Description |
|---|---|
| Q5ZJ08 | Tyrosine--tRNA ligase, cytoplasmic OS=Gallus gallus OX=9031 GN=YARS1 PE=2 SV=1 |
| Q6TGS6 | Tyrosine--tRNA ligase, cytoplasmic OS=Danio rerio OX=7955 GN=yars1 PE=2 SV=2 |
| P54577 | Tyrosine--tRNA ligase, cytoplasmic OS=Homo sapiens OX=9606 GN=YARS1 PE=1 SV=4 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001635 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01588 all species → | tRNA_bind | Putative tRNA binding domain | Domain | Interproscan |
| PF00579 all species → | tRNA-synt_1b | tRNA synthetases class I (W and Y) | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR014729 all species → | Homologous_superfamily | Rossmann-like alpha/beta/alpha sandwich fold | Interproscan |
| IPR002547 all species → | Domain | tRNA-binding domain | Interproscan |
| IPR012340 all species → | Homologous_superfamily | Nucleic acid-binding, OB-fold | Interproscan |
| IPR002307 all species → | Family | Tyrosine-tRNA ligase | Interproscan |
| IPR051270 all species → | Family | Tyrosine-tRNA ligase and regulatory protein | Interproscan |
| IPR002305 all species → | Family | Aminoacyl-tRNA synthetase, class Ic | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11586 all species → | TRNA-AMINOACYLATION COFACTOR ARC1 FAMILY MEMBER | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000049 all species → | Molecular Function | tRNA binding | Interproscan |
| GO:0000166 all species → | Molecular Function | nucleotide binding | Interproscan |
| GO:0004831 all species → | Molecular Function | tyrosine-tRNA ligase activity | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0006437 all species → | Biological Process | tyrosyl-tRNA aminoacylation | Interproscan |
| GO:0004812 all species → | Molecular Function | aminoacyl-tRNA ligase activity | Interproscan |
| GO:0006418 all species → | Biological Process | tRNA aminoacylation for protein translation | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K01866 | YARS, tyrS; tyrosyl-tRNA synthetase | EC:6.1.1.1 | Mitochondrial biogenesis | ko03029 | deepkoala |
Genes whose expression across the transcriptome samples of Leptoseris scabra tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Leptoseris scabra, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
