Detailed information of ANN10588-RA in Leptoseris scabra

Genomic Location: Scaffold_8__1_contigs__length_51692913:15514087...15554541
NR annotation: CAH3146812.1, unnamed protein product [Porites lobata]
Species Leptoseris scabra · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q14517Protocadherin Fat 1 OS=Homo sapiens OX=9606 GN=FAT1 PE=1 SV=2
Q99PF4Cadherin-23 OS=Mus musculus OX=10090 GN=Cdh23 PE=1 SV=2
P58365Cadherin-23 OS=Rattus norvegicus OX=10116 GN=Cdh23 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0011362 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00102
all species →
Y_phosphataseProtein-tyrosine phosphataseDomainInterproscan
PF00055
all species →
Laminin_NLaminin N-terminal (Domain VI)DomainInterproscan
PF16070
all species →
TMEM132Transmembrane protein family 132FamilyInterproscan
PF00028
all species →
CadherinCadherin domainDomainInterproscan
PF13385
all species →
Laminin_G_3Concanavalin A-like lectin/glucanases superfamilyDomainInterproscan
PF00963
all species →
CohesinCohesin domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR020894
all species →
Conserved_siteCadherin conserved siteInterproscan
IPR000242
all species →
DomainTyrosine-specific protein phosphatase, PTPase domainInterproscan
IPR008211
all species →
DomainLaminin, N-terminalInterproscan
IPR003961
all species →
DomainFibronectin type IIIInterproscan
IPR013320
all species →
Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR002126
all species →
DomainCadherin-likeInterproscan
IPR015919
all species →
Homologous_superfamilyCadherin-like superfamilyInterproscan
IPR003595
all species →
DomainProtein-tyrosine phosphatase, catalyticInterproscan
IPR008979
all species →
Homologous_superfamilyGalactose-binding-like domain superfamilyInterproscan
IPR008965
all species →
Homologous_superfamilyCBM2/CBM3, carbohydrate-binding domain superfamilyInterproscan
IPR018247
all species →
Binding_siteEF-Hand 1, calcium-binding siteInterproscan
IPR000387
all species →
DomainTyrosine-specific protein phosphatases domainInterproscan
IPR016130
all species →
Active_siteProtein-tyrosine phosphatase, active siteInterproscan
IPR039808
all species →
FamilyCadherinInterproscan
IPR036116
all species →
Homologous_superfamilyFibronectin type III superfamilyInterproscan
IPR031437
all species →
DomainTransmembrane protein family 132, middle domainInterproscan
IPR013783
all species →
Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR029021
all species →
Homologous_superfamilyProtein-tyrosine phosphatase-likeInterproscan
IPR002102
all species →
DomainCellulosome anchoring protein, cohesin domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24027
all species →
CADHERIN-23Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005886
all species →
Cellular Componentplasma membraneInterproscan
GO:0007155
all species →
Biological Processcell adhesionInterproscan
GO:0004725
all species →
Molecular Functionprotein tyrosine phosphatase activityInterproscan
GO:0006470
all species →
Biological Processprotein dephosphorylationInterproscan
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0005509
all species →
Molecular Functioncalcium ion bindingInterproscan
GO:0007156
all species →
Biological Processhomophilic cell adhesion via plasma membrane adhesion moleculesInterproscan
GO:0016020
all species →
Cellular ComponentmembraneInterproscan
GO:0030246
all species →
Molecular Functioncarbohydrate bindingInterproscan
GO:0016311
all species →
Biological ProcessdephosphorylationInterproscan
GO:0016342
all species →
Cellular Componentcatenin complexInterproscan
GO:0045296
all species →
Molecular Functioncadherin bindingInterproscan
GO:0098609
all species →
Biological Processcell-cell adhesionInterproscan
GO:0098742
all species →
Biological Processcell-cell adhesion via plasma-membrane adhesion moleculesInterproscan
GO:0000272
all species →
Biological Processpolysaccharide catabolic processInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ANN10588-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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