Gene detail

Detailed information of ANN10596-RA in Leptoseris scabra

Genomic Location: Scaffold_8__1_contigs__length_51692913:15687282...15697683
NR annotation: XP_020630817.1, WD and tetratricopeptide repeats protein 1-like [Orbicella faveolata]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN10596-RA

ATGGAAGCTTACAATATTACAACGCAAATCAGGAATCGAGAAGTGAAGACGAACATCACGCGAAGCTTTCAGAGAAGGTTTCAAGTCCATCCACCATTTGTAGAAAGATTTGGACTGGAAACAGAGCTTGAGGGTCATTCAGGATGCGTTAATTGTCTGGAATGGAATGAAGCTGGAAATCTCCTTGTGTCAGGGTCAGATGATCTTAATGCCATAGTGTGGGATCCACTGCAACGTCAAATGAAATGTTGTATTAAAACAGGACACTCTGGAAACATCTTCTCAGTTAAGTTTTTACCACGGATAGGAGACAGAATCATTGCTACAGCTGCTGCAGATGCTAAAGTTCAGATTCACACAGTGGAAACAAAGGAGACATCACAAGTGTACAAATGTCACATTGGACGTGTGAAAAGACTGGCTACAGCTCCTGACACTCCATATATGCTATGGAGTGCATCTGAGGATGGAACTATAAGGCAGTTTGACCTGCGTCAACCACACACATGCAACACAAGCAGCAAGAACTGCAAAAATGTACTCATAAACCTGAATATTTATGTTGGTGCCATGGCAGAAGCCAAGTGCCTTGCAATAAATCCTCTTCAACCCGAACTTCTTGCTGTTGGATGCAATGATCCTTTTGTGCGACTGTATGATCACAGAATGCTAGCGTCACATAGTTTCTCGGAGGTGAAGAAATCGTCCCACAGCAGTCCAGAGGATGCAAAGCTGCCACCTGGATGTGTTCAATACTTTGCGCCTGGCCATTTGCCACCACACCTAAGTAAAGATTTGCGGAGAAGATTTCGAGCCTATGTTGCAACATACGTGAATTTTTCTCCTTGCGGACGTGAATTGATTGCCAATCTAGGTGGAGAACAAATATACTTGTTTGATATCAAGCAACATCGAAAAGTCTTGAAGTATCAGGTGGTGAATGGAATTTCTTCTTCGCTAACTTCAAATGGTGTAGTAAAGAATGTTGTAGATAATTTTGGTGTTTCTCCGAGCATAAATGGATTTTCATCCTCAGCCAATGGTGCAACAAATGGTTACAAAATCCCAACCTTAAATGGGAAGCGGACTGTTGAGGAAAAGAAGCCTTGCAAACCTGCACACAGCAACAATCACTGTAGCGTTACCCTGGAGCTGCCACCCAAAGCCCTTGAACTTAAGGCAAAAGGAAATGATGCTTTTTGCCAGCAAAAGTTTTGGACAGCTGTCAATTTGTATAATGAAGCAATCTGTCATGCTGCTGATTCTGCTGTCCTCTATGCAAACAGAGCCGCAGCCTTTATCAAAAGGGCATGGGATGGAGACATCTATGCAGCTTTGCGGGACTGTCACAGGGCACTAAGACTGGATCCCAATCACACCAAGGCACATTTCCGTCAGGCACGGTGCCTGTATGAACTGCGGTGGTTCCAGGAAGCTCTGTCCTGCTTAAACAATTTCAAGTTAAAGTTTCCAGAACAAGCTGAAGGAAGTGCGGCAAAGACTCTTGAGAGGGATATCAGAGCAGCTACATTTGCAGAGACAGAAGACAATGAGGAAGAAGAGGCAAGTGGTCAATCTGATTCTGCTCCCACTCGACGCAGGAGAAGGCTCAGCATTGTATCTGATCAGGAGAAAGATTTTCGGTCAGGTGCACTTGACTACGAGCAGAGATTTTGTGGACACTGTAACACAACTACTGACATCAAAGAAGCAAACTTCTTTGGAAGCAATGGACAGTATATAGTGGCAGGCAGTGATGATGGCTCTTTCTTCATGTGGAACAAGGAGACAACGAATCTAGTTAGGGTACTAAAGGGGGACGATTCTATTGTCAACTGCTTGCAACCACACCCAAGCTCGTGTCTTTTAGCCACCAGTGGAATTGACCCTGTGGTTCGACTTTGGAGTCCGTGTCCTCAGGACGGGGCTACGCAAGATAGACATATTGATGAGGTAGAAGCTGCTGCCAAGGCAAATCAGAGAAGAATGAATGCCGACCCATTAGAAGTTATGTTGATGAATATGGGGTACAGAACCAGGTTCACGGTGGCAGAAGGTAGTGACGATGATGAGACAGAAACTCCTATTCAATGTCGAACTAGCTAG

Transcript

ANN10596-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8N5D0	WD and tetratricopeptide repeats protein 1 OS=Homo sapiens OX=9606 GN=WDTC1 PE=1 SV=2
Q80ZK9	WD and tetratricopeptide repeats protein 1 OS=Mus musculus OX=10090 GN=Wdtc1 PE=1 SV=1
Q94BQ3	Protein ALTERED SEED GERMINATION 2 OS=Arabidopsis thaliana OX=3702 GN=ASG2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008096 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR045151 all species →	Family	DDB1- and CUL4-associated factor 8-like	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15574 all species →	WD REPEAT DOMAIN-CONTAINING FAMILY	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0045717 all species →	Biological Process	negative regulation of fatty acid biosynthetic process	Interproscan
GO:0080008 all species →	Cellular Component	Cul4-RING E3 ubiquitin ligase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11807	WDTC1, DCAF9; WD and tetratricopeptide repeats protein 1	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.