Gene detail

Detailed information of ANN10930-RA in Montipora grisea

Genomic Location: Scaffold_7__1_contigs__length_59928471:53912659...53916410
NR annotation: XP_029186836.2, TNF receptor-associated factor 3-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN10930-RA

ATGTCATATTTTGTGGGTGATGTCGAATTCGTAAGTGGAACATTGGATGATTGTTATAAGTGCGTCAAGTGCAGTCAGATTCTTGACGATCCCATGCAATTTCCGTGTGGGCATAGGTGTTGCAGTGAATGCGTAAATGCTATGTTCGCAGCGGAGAATGACGATCGTGGAAAGTGCCCGCTCGATCTGCAAATCATTCGACGCAAAGAAGTGTTTCCAGATGTATACGCCAAACGGGAACTGTTTGAGTTTAAGTGCTTTTGTTCAAACAAAAAGAGAGGGTGCGAATGGAAGGGTGAATACCCAAGATTCCGGGAACACTACTCCGTGTGTGCTTATGCCGACGTGAGTTGCGCTTACTCTAGTCATGGATGCGATGCAGTCGTACCGAAGTCCGAGTTAGCACATCACATAGAGAAAGACTGTCCGTTCAGATTGGTCGATTGCGAGCATTGTGAACTCGAACATCGAGCAAAGGACTCGTCGGATCATCTGAAAGAATGCCCCAAGATAAAAATGACAACCCGTCGTTTTGGTTTGCACGAGAGAGGGTATATAGTGAGTCTCTTCTTCTCGCCGAAGCACCAGTCTATCCAGTGTTATCTCTCGAGTTCTGGTTTTGCAAACATGTCCTATTTTGTGGGCGATGTCGAATTCGTAAGTGGAACATTGGATGATTGTTATAAGTGCGTCAAGTGCAGTCAGATTCTTCACGATCCCATGCAATTTCCGTGTGGGCATAGGTGTTGCAGCGAATGCGTAAATGCCATGTTCGCAGCGGAGGAGGACGGTTGGGGAAAGTGCCCGCGCGATCTGCAAAACATTCGACGCAAAGAAGTGTTTCCAGATGTATACGCCAGACGGGAACTGTTCGAGTTCAAGTGCTTTTGTTCAAACAAAAAGAGAGGGTGCGAATGGAAGGGTGAATACCCAAGATTTCGGGAACACTACTCCGTGTGTGCTTATGCGGACGTAAATTGCGTCTTCTCTAATCACGGATGCGATGCAGTCGTACCGAAGTCCGAGTTAGCACACCACATAGAGAAAGACTGTCCGTTCAGATTGGTCGATTGCGAGCATTGCGAACTCGAACATCGAGCAAAGGACTCGTCGGATCATCTGAAAGAATGCCCCAAGATTCTCGTGGAATGTCCTCACGGTTGCAATCGAGACAAATTCTTCAGAGAATTGCTACCGGAACACGAAAAATCGTGCCCTAAAATGCCGACGGTTTGCGTTTTTAGCAATGTCGGCTGCAATTTTCGCGGTCCCAGAGAAAGTCTGGACGATCACATCGGTTCCAATGCACCTGAACATTTAATTCTCGCGGGTGATTTTATTCGAGTGGTCCTAGCACGGCTAGAGCTCCACCAAAAAACCGTAGATTCGTGCGTGGAAGCGAACAAGAAACAAGAGGAACGATTGTCTGCGCAACAAACGATTGCGAGATTGAATAAAAATACGTTATTCGCGCATCAAGAAAAAATGGTCAGGATAGAGGGGAGTCTTGGGCATCTGGAAGAAAGTCTCGAGCGTCTGAAGAAATCTGAGGTCGGTGGTGGTGATGTTAAGAAACAATTAAACTTATTCGACGAACGGTTGTCGATAATGGGTGCAGAAATCGAGGCGATGAGGGGTTCTAGAGACCCCCCGCGATTTTCGCCATCTGGCAGTCGTGAATCGGACCGATTAGATCATCATTTAAGATTACACGAAATACAGATACAAGAGCAAGCCCAGGCTATTTCCCACTTAGAAAACACTTCGTACGATGGAACCTATGTTATGAAGATTGACAATGTTCGATGCAAATTTCAAGATGCAATTTCAAGAAAATGTACACGGATAGAGAGTCTCCCTTTTTACACTTCGCGGAGAGGTTACCGATGTCAAATGTCTGTGTATCTGAACGGAGACGGAGAGGGTCATGGGACACACATGTCCATATTTCTCGTGATGATGCGAGGAGATTTTGACGCCATACTTTCGTGGCCTTTCAAACAGAAAGTTACGTTCACGCTTATTGACCAAGAGAAGAACGATGATCATCTGGATAACTTCAGGCCCAGAGTTGACGATACAAGTTGGAGACGGCCCCGTAGTACAAAGAACGTAGGATCGGGAATCCCAACGTTTATCTTACACGAAAAAATGTCTTCTGGTGGATATATTCGCGACGATACGATGTACATAAGTGCGCAAATCGAGACCATCGGGTTACGCAACTTGTAA

Transcript

ANN10930-RA

Protein

Uniprot

Uniprot term	Description
Q60803	TNF receptor-associated factor 3 OS=Mus musculus OX=10090 GN=Traf3 PE=1 SV=2
P39429	TNF receptor-associated factor 2 OS=Mus musculus OX=10090 GN=Traf2 PE=1 SV=1
Q13114	TNF receptor-associated factor 3 OS=Homo sapiens OX=9606 GN=TRAF3 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02176	zf-TRAF	TRAF-type zinc finger	Family	Interproscan
PF13445	zf-RING_UBOX	RING-type zinc-finger	Domain	Interproscan
PF21355	TRAF-mep_MATH	TRAF/meprin, MATH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR002083	Domain	MATH/TRAF domain	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR001293	Domain	Zinc finger, TRAF-type	Interproscan
IPR027370	Domain	Zinc finger, RING-type, eukaryotic	Interproscan
IPR008974	Homologous_superfamily	TRAF-like	Interproscan
IPR049342	Domain	TRAF1-6/MEP1A/B-like, MATH domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10131	TNF RECEPTOR ASSOCIATED FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0033209	Biological Process	tumor necrosis factor-mediated signaling pathway	Interproscan
GO:0070534	Biological Process	protein K63-linked ubiquitination	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan