Gene detail

Detailed information of ANN11004-RA in Leptoseris scabra

Genomic Location: Scaffold_8__1_contigs__length_51692913:23104229...23112013
NR annotation: XP_029196693.2, runt-related transcription factor 1-like isoform X1 [Acropora millepora]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q01196	Runt-related transcription factor 1 OS=Homo sapiens OX=9606 GN=RUNX1 PE=1 SV=3
Q63046	Runt-related transcription factor 1 OS=Rattus norvegicus OX=10116 GN=Runx1 PE=1 SV=1
Q03347	Runt-related transcription factor 1 OS=Mus musculus OX=10090 GN=Runx1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005959 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00853 all species →	Runt	Runt domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000040 all species →	Family	Acute myeloid leukemia 1 protein (AML1)/Runt	Interproscan
IPR012346 all species →	Homologous_superfamily	p53/RUNT-type transcription factor, DNA-binding domain superfamily	Interproscan
IPR008967 all species →	Homologous_superfamily	p53-like transcription factor, DNA-binding domain superfamily	Interproscan
IPR013524 all species →	Domain	Runt domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11950 all species →	RUNT RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08367	RUNX1, AML1; runt-related transcription factor 1	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.