Gene detail

Detailed information of ANN11029-RA in Nanomia septata

Genomic Location: chr5:18547185...18549086
NR annotation: XP_002157646.4, AT-rich interactive domain-containing protein 1A [Hydra vulgaris]
Species Nanomia septata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A2BH40	AT-rich interactive domain-containing protein 1A OS=Mus musculus OX=10090 GN=Arid1a PE=1 SV=1
O14497	AT-rich interactive domain-containing protein 1A OS=Homo sapiens OX=9606 GN=ARID1A PE=1 SV=3
Q8IN94	Trithorax group protein osa OS=Drosophila melanogaster OX=7227 GN=osa PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004947 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12031 all species →	BAF250_C	SWI/SNF-like complex subunit BAF250/Osa	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033388 all species →	Domain	SWI/SNF-like complex subunit BAF250, C-terminal	Interproscan
IPR021906 all species →	Family	SWI/SNF-like complex subunit BAF250/Osa	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12656 all species →	BRG-1 ASSOCIATED FACTOR 250 BAF250	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005654 all species →	Cellular Component	nucleoplasm	Interproscan
GO:0006338 all species →	Biological Process	chromatin remodeling	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0016514 all species →	Cellular Component	SWI/SNF complex	Interproscan
GO:0031491 all species →	Molecular Function	nucleosome binding	Interproscan
GO:0035060 all species →	Cellular Component	brahma complex	Interproscan
GO:0045893 all species →	Biological Process	positive regulation of DNA-templated transcription	Interproscan
GO:0071565 all species →	Cellular Component	nBAF complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN11029-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.