Gene detail

Detailed information of ANN11052-RA in Leptoseris scabra

Genomic Location: Scaffold_8__1_contigs__length_51692913:24229522...24254013
NR annotation: XP_020618156.1, brefeldin A-inhibited guanine nucleotide-exchange protein 3-like [Orbicella faveolata]
Species abbreviation LSCAB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN11052-RA

ATGGAAGAGGTGTTGTCTAACTTAGCTCACGATGCCACGTCGAACAAAGTGAAGACCGTTCGGGACGCGTGTATTTCAGCTACGGATGGCTTGTTCATCAGTCGAAATGGAACGAGGAAGGTGCAGCCGTATGAGCTTAGGGAGAAGTGCTTTCTGCCGCTCAAACTGGCTTTGGAATCGAGGTCTAGCAAGCTCTCTCTCCACGCTATAAACGGGCTACAGAAGTTAATTTCTGATGACCGTTTCCGGTCGGAGAATGAAGAAGACGCAGAATGCCAGCTTCCGGTTCAGTTTCTCTCCACAGTAGCGTCCACTCCCTCTCTGGCAGATGAAGTACAAGTCGAAGTTATGAAGCTTCTGCTCATCATAACCTGTTCGGCTTCTTGTGAAGTTCATGGCGAATATCTGATCAAACTTGCTGAGATTTGCATCGAGACTTACACGCGCGCCCATCAGTTGGCGACCAAGACAGCGTGCAGAGCCACCTTAACACAGATGCTTAGCTCGGTGTGCCATCGCTTACAAGACAGTTTAGCTAGTCACATGAGCGTTGTTATTGCTTACACACCATGTGAGCTAACATCCCGCTTTCCCATCATGTATGCAGATACCAACCTGCTTTCCACGGACCATGCCAAGCTGTTAAGTCAAGACGTTGTGTTGTTATTGAAGCATTTCTGCTTCCGCCTGACTGCTGGACCAAGTGTGCCCGTTCAAGGTGGCCAGGCCATTCCGTTGTACCTGGAATCCATCTTGGTGATGCTAAGCAGCTTGTCCACAGCTTTGCAACAGGAAAAAGAATTCATTAACGTCATCTGGCAACTTCTGTGTCCCGCCTTGATTCAGCTGCTAGGCAGCCCTTTAACAGACCTAAACAAGCGCCCTAAGACCGTTACCCAGTTCCCAGAGGACATCAACAGAGGGGGCCGGGGAACAGGGAACTTTGCCAAGTCCACCTCAATTGTGGGGCCCATACCAAGGACCATTTACAACATAGCCACGGAGCTCCTACGACTTGTGGGCCCCTTGGCCGCCATGAGACCCGTACTAGAGTCGCTGTTTCATCGTATCATTCTATATCCCCCAGCACAGCAGAGAGCAGAGGCACTAAAGGCTTTAAAAGAGTTTCTCGCCAGTCCTCAGCGGCTTTTGGACGCCGCAGGTCCAACGATCATTGACAAAGATAACCCCCCATCTCCGGACTCCCCCACGGAGCAAAAGAAATCCGAACTGGATTTACTGCGACTCCTGATGGACGGCATCGTGGAATCCGCTCGCTGCGCCGACAGTACAGTGGCCAGCTGCAGTGTAGCATGCGTGGTAGCTCTCCTAGGATCGTTAGAAGACTTGAGTCAAGGTCGAGGCTTAAGTGACGAACACATTGAATTCCTAAGCAAAATGAAAGAAACAGATAACTGGGAGACGCTAAAAGAACAATATGATAACGCGGCGTCAGCGCGGGAAATGGGGAATTCTATCAATGGCAGAGTCAATGGAGAGGGGGGCAATTATGTACGGGGCAACAGGTGGGAGATGAATTCCCAGGGGTCTCCTGACGGGGATATCGAGTCTTTGACTGAGCGCTTTGAAAAGGACGGAGGAGTCTGGGATGGTCTCACGGATGGCGAAGTTAGAAATGATGATGATGAACCGGAAATCAAGCCTCTTATCCCCAAGAGTGTACACTTTGCTTCTGAAGACGAAATCACCATGTTTGAAACGCACGAGAATGAAAACACGAAATCCTCCCGTGCTACTCCTCCCCCGCGGTCAGGAATTCCTCGCAAGAGTAGTCTGCCAAAAAGAGTTGGTCCCAGTGCCCAAGGTAATACGAGGACGACGGTCAAACGGTCCTCGTCACTTGATGGCAAAACGCGACAAAAACCGACAGTGCAGAAACGAGCCGTGAGTGGGACTCCGCGTCAGCGAGATCGCGCGGGCTCAGATGGTGGAGAGATGTCGGAAAGAAAAGCAAACTTTTTGACCTCCGTAGAGAAAAACAACGCGAAATCGGCGAGCAAGTTTGGTATGCGCAGGTCTTACTCTGATAATGACATTACAGCAAATAAGGGCTCTGTATCTCATCTTCATTTTTTCCAGTTGAGGAAGTCAAATTCCTGGTCAGCTTTTCTTTCTCAAAGCGAGAATTCAATGGCTGAACATGGCAAAAAGAAGAGTGCGCCACCCAAACGAACCGCTCGAGGCACTATTCCACGAGCACGCGCGCAATCAGCGGGTGATTCTACGCTCAATGCGAGACCAGGGCTAAAGCGATGGTCAAATGAAGGGAAAATACTTGATCCTGTCAACAGGAAAATGTCTGATCAAACGTCGTCAGGGCAACGCAAGTACGTCGAATCTAAAGCAAATAAGATAGAAGCGAGAGAAAGGGCTTTGAAGGAGGACAAAGACCGTTCTCCAACGAAAGGTCCCCGAACTACGCTTCGGAGAAGTCGATCAGCTTCGGAATACGATCGTAAACAGCAAAATGGTAACAGCGATAAACCAAGGGGAATTCTGCTTAAAAGCCAGAGCATGGATGAACCGGAAAGCACTAGAAGTGCATCGAGTTCGCCAAAGAAAAATACATCACAATGTGTGAAAATCAACGGTGTTTTGGTGAGGAAAGGAAAAGATAACACTCCAGCCAAACAATCTCCGGACAAGAAGAAGGTAAAGGAAGTCAAAAAGAGCGTCGAGGAAAACGAGAAAGAAGGCGCAAGGAACTTTGCTCGCTGTTTGCTTGGCATTCTTCCATCGGTGTTGAATCTTTCCGATCCAGTTGCGGTCGACGAAGCCCTGCAGCAATTTGCCTCCGATGTCTGTGAGGCGGTCACGTGCATGGCACTCAAGCGCAAGAATGTGCCAAACTTCGGCACGCTTCGGGGACGGTCGGATCTGGTCGACGAGAGGTCGGGTGAAGGAGCGACTTCGGATCCGAGCTACCCGATTCTCAACGCGGATGGTGTGTACGTTACCGTGTATGCTACAATGACGCTTAATCTGAAGTTACTAAAGAGTGGATACTATCAAAAGAAAGGAGCTCAACCAGCGCTGACGCAGGAGAACTTCATTGACACTATTCTGAACAGTGGCGTTCCTATTGGTCTATCCTCCGTTTGGCTGGGTGAGCTGTATCGACTGGTTACAACCTACAACATCTTAGGAAAGGCTGGCTATACCACGGAATCACCTGAGACGAATCGCGCGCTCATCAACACGCTGAACGACAACATGCTCTCAGAGGAGGAGGACAGCCCATTCCTGCACCACAGGAACCCAAGCACACTGCCTCCAGCCAAGAGAGAGGGTATGAAGTTTGCCAGGAGAGTACTGCTTACAACATGGGATTCAGTGTTGGAGATTCTGTCGGTGCCTCTGGAGACGTCCACCTCAGGTGTCACGAATGGTGTTGCTGCGATGCTTGGCGGAGAATTCAAAAGAGATCACAACCGTGAGCGTGACACGATCTGCCTCAGTCTGGACGGATTGCGACGCGCCGCCCGCCTGTGCTGCACTCTGGGAATTCAAACCCGCTGTGAACTGGTACTAGCGCAGTTAGCAAATGCATCCTGTGGGGGAGAGGGGCTAGAAGGAAAGAGAAGCAGGTCAAACTCCTCACCAGGACAAATAAAGCTTCACGCTGCGCATGTCCTGAGTATGGATGGACTGCTGGCCGTTGGAGTAGAGCTCGGAAGTCACGCGCCGAAATGCTGGAAACACGTATTTAGATGCTGTACGTATATATCACAACTGGAACGCGTGAATTTTAGTAACGAAGTCGGAGACCAGTCGTCACATATGACCCCACCGAACTCTCTCCGGATCAATTCCGATATATCTTCGCCCATGTCCGAATCTTCTAGTATTTCGGATTACCTTTCTGGCGAATTATCCCCGAATGGCACCGGAATTGTCCGACAAAATTCCGAGACTGGATCGGAACATGGGCCGTCTAACAGTGGACTGTTGACTCCGACCGACGCCTCACGCGCCATCTACGCTCTTTCGGCTGCTGTAGATCGTCTTTTCGAGCACGCTGCCAACACGCTCCACCTCGAAGGCCTGTTGTCTTTCCTAGAGGCTCTGGTTCATGCATCAAGGTCACAGCTATTTGGTTCTGTAGCTGACAAAGTTACAAATTCACCCGGAGGAGTTTCTGCCAGCAGTCAAACACCTTCTTACAGTACAACACTGCATTTGTACCGACTGGCTGACGTCATACTCCGGAGCGCCCGCAATACTAGCAGACCGCTGCTGCATCTTATGAGGGCATGGACGGTGATTTCACCACATTTTGTCGAGGCCGCCTCTCACAAGGACAGGCACATTTCCAAGCTAGCGATCACGTCCCTTCATGACATCATCACTGAGCTACTTAGTAACCGCAGCGAGCTTCCTCACTTTTGGTTCCACGAGGCGTTGTTCAAGCCCCTTGATGGGATCATGTCTTCACCAACCTGCAGCGAGGAGGAACAAGAACAGATATTAACAACACTTTCTCAACTGGTGGAAACTCATCTAAGCAGCATCAAGTCTGGATGGAGACCAACATTTGCCGCCTTGCGGAACATGCCAGTCAATTCACGGAAGCTCACGGATGGGTTTGAAGCTGATCACAGACCTCATCAAATTCTCGACATACTCTCGGCTTTTCTAACGAACAAAAACTCGTCGGTATTCGCGGCGGCCGCGGTGCAGTGCATCCAAACACTTCTTAAGTTCGTACGTGGTTCGGAATGCGACGACAACTTCGAAGGTAGCCGAAGCGATTCCGACAGCAACGACAACAGCGACGCGGGCACAGCCAATGAATTGTGTCTCCCGGCTCTGCAAGATCTGTTGAACATGTCGAAAAAGTTGGCCTCGATTTACATCATGCCATCCAGTTTGGTGTTTCACGGATCACATGCTATTTGTCTGGTGGAGCATACGCCCGACTATCCGGGAACTCCTAGTCCAACTTCGAGCCCACACAAGCCAAACGAGTTAACCAATCGCAAGGCAAAGGCCCAAACTCCTATCATGACGTCTGCAGCCTCTATCGCGTCCATAGATGACACTGGAGTGCTCCGCGTTTGGTTCCTTCTACTGGAAGGACTCACAAAGGTTGTCGCTCAATGCCCCTGCAAGTATCAGCCTCAAACCTTAGAGGTCCTGTTCGATATTCTGCGCTCCATAACCACCGTTCCAGGACCTCACTTTTCCATCTACGTCGTTACTAATCTTTTGTTGCCCATGCTAGAATCCTGGGTTGAACGAGGAAACAGGGATGGTAGCTATTGGGAGAGTACAGCGGGGAACTTCAAACACGCATGCGGTCTGGTGACCGAACTGGTTGTGGAGGAGTTGAGTCAGTTCCTTAGCGTTCAAGGAGCAGCAGAATGTGTGCCCGGAATGATCAAACAGACTTTAGACCTTCTGTTGGAGTGTGTTTCGCAGCCAGTGGAAGGCATAGCCAGGCTGGGATGTTCCTGTTTAAGGCACCTGTTACTGTCAGGAGGGCCTGTCTTCACAGAGGACCTATGGCTCATAGTCAGTGAAGGCCTCAGAGAGGCGGTACACACGACGCTCTCAAATCTAAGGGACTTGGTAGCGTGTTTCCAGCCAGGCTCATACAGTGTTAACGGAGACGAGGGCATGACAGTCAGGGTTGTCGCACGGCGAGACGTCATAACGGCTGATATGATACGACTACAGCAAGTAGCAGAACAGGTGTTTTTGCTTGACAATCAAGTCGACGACTCTTCTACGCACACTGAAGACTCCCATGCGCCTACGAATGAGGAAGATGACCAGCGGTCTTACGTCTTCGTGTTGTCATCAGTGGAGAACAAAGAAAAACCGGAGAACGCAGATAGGGTTCCTCTCCGTGGCTTACTCGTCAGCTTGCTATCCCATCAGCTCTTGCTGCAGACTCTCGGTTCCATTCTCCTGGACAATGCGGAAAGCGTCATGGCACAGAGCTCGATTCCAGGCAGCCCGGGTGCTTCCATGGAAAGCTTTAGCAGTGAGGGGGCTGAGGCGAGTCTCCCAGGCCTCTTGTCCTACCTCTCACCGGCAAATCTTTCAGTGCTTTTTGATTGCTTGATGGAGTCGCACAGTGTCGCATATGAATTCAATGCTCGGCCAGGTCTGCGGTCATTGGTACAGAAGCTTGCCAAGCTAGATGCGCCAGCGAATCTCCTGCGGCAATCCACGACCGCGTTCACGTGCTACCTTCATACGCTGTTCCAAATTTGCAAGCATAGTGGAGAGCACTTCTCCAGCTCGCATATCAAGCGTATCTTGACCGGAGACCGTATCACGAACAACCAGGAGAAGGATGACGACGGGGTAAAAGAAGAATCGGTGGGAACTCCTGCGCGCCACAACGACTTGCTCAAAGGCGATCGCAATGTGGATTGGATCGTGCGACGATTGAACGAGGCTTGTGATCAGCTTAGCAGCGTTTACGTTCGTCTTTATAACCAATACAAAAGTGATTCCCCGGGCAACATGTCTTTCGAGGTCGAGCTGGAAAGAAGCTTGTCTCTGTCGTCAACGTCGTCACCAGCTCGTGATACTTCAGCCTGGAGCAATAACGGTTATGCGGATGAACCTCTAAGTTCCCCGCTCGGAAGATGGAAGCTCGCTTCCGAAAAATTATCGCGGGATTCGAAATCCAGACACCATCAACAGCTCCTCGAGGACGACATCCGTGTGATTGAACTTGAAAGACAATTCTTGAAGCGCAAAGAGGATGAGTTGCTTCAAGTTAACATTTGGACAAATTTAGTGATCACAATGCTTGAACTACTCTTGAATCTGCCCACATTGCAATTCAAGGCTGTACTGCCAGCGGTGTTTCCCGCGGTGACTTGCTTAATTTCGACTGGCGCTGACACCAAAGTGAAACAGTTAGTCTGCGAAGTCGTGCGCCGAGTAGGATCCATATATGGCATCCTATAG

Transcript

ANN11052-RA

Protein

ANN11052-RA

MEEVLSNLAHDATSNKVKTVRDACISATDGLFISRNGTRKVQPYELREKCFLPLKLALESRSSKLSLHAINGLQKLISDDRFRSENEEDAECQLPVQFLSTVASTPSLADEVQVEVMKLLLIITCSASCEVHGEYLIKLAEICIETYTRAHQLATKTACRATLTQMLSSVCHRLQDSLASHMSVVIAYTPCELTSRFPIMYADTNLLSTDHAKLLSQDVVLLLKHFCFRLTAGPSVPVQGGQAIPLYLESILVMLSSLSTALQQEKEFINVIWQLLCPALIQLLGSPLTDLNKRPKTVTQFPEDINRGGRGTGNFAKSTSIVGPIPRTIYNIATELLRLVGPLAAMRPVLESLFHRIILYPPAQQRAEALKALKEFLASPQRLLDAAGPTIIDKDNPPSPDSPTEQKKSELDLLRLLMDGIVESARCADSTVASCSVACVVALLGSLEDLSQGRGLSDEHIEFLSKMKETDNWETLKEQYDNAASAREMGNSINGRVNGEGGNYVRGNRWEMNSQGSPDGDIESLTERFEKDGGVWDGLTDGEVRNDDDEPEIKPLIPKSVHFASEDEITMFETHENENTKSSRATPPPRSGIPRKSSLPKRVGPSAQGNTRTTVKRSSSLDGKTRQKPTVQKRAVSGTPRQRDRAGSDGGEMSERKANFLTSVEKNNAKSASKFGMRRSYSDNDITANKGSVSHLHFFQLRKSNSWSAFLSQSENSMAEHGKKKSAPPKRTARGTIPRARAQSAGDSTLNARPGLKRWSNEGKILDPVNRKMSDQTSSGQRKYVESKANKIEARERALKEDKDRSPTKGPRTTLRRSRSASEYDRKQQNGNSDKPRGILLKSQSMDEPESTRSASSSPKKNTSQCVKINGVLVRKGKDNTPAKQSPDKKKVKEVKKSVEENEKEGARNFARCLLGILPSVLNLSDPVAVDEALQQFASDVCEAVTCMALKRKNVPNFGTLRGRSDLVDERSGEGATSDPSYPILNADGVYVTVYATMTLNLKLLKSGYYQKKGAQPALTQENFIDTILNSGVPIGLSSVWLGELYRLVTTYNILGKAGYTTESPETNRALINTLNDNMLSEEEDSPFLHHRNPSTLPPAKREGMKFARRVLLTTWDSVLEILSVPLETSTSGVTNGVAAMLGGEFKRDHNRERDTICLSLDGLRRAARLCCTLGIQTRCELVLAQLANASCGGEGLEGKRSRSNSSPGQIKLHAAHVLSMDGLLAVGVELGSHAPKCWKHVFRCCTYISQLERVNFSNEVGDQSSHMTPPNSLRINSDISSPMSESSSISDYLSGELSPNGTGIVRQNSETGSEHGPSNSGLLTPTDASRAIYALSAAVDRLFEHAANTLHLEGLLSFLEALVHASRSQLFGSVADKVTNSPGGVSASSQTPSYSTTLHLYRLADVILRSARNTSRPLLHLMRAWTVISPHFVEAASHKDRHISKLAITSLHDIITELLSNRSELPHFWFHEALFKPLDGIMSSPTCSEEEQEQILTTLSQLVETHLSSIKSGWRPTFAALRNMPVNSRKLTDGFEADHRPHQILDILSAFLTNKNSSVFAAAAVQCIQTLLKFVRGSECDDNFEGSRSDSDSNDNSDAGTANELCLPALQDLLNMSKKLASIYIMPSSLVFHGSHAICLVEHTPDYPGTPSPTSSPHKPNELTNRKAKAQTPIMTSAASIASIDDTGVLRVWFLLLEGLTKVVAQCPCKYQPQTLEVLFDILRSITTVPGPHFSIYVVTNLLLPMLESWVERGNRDGSYWESTAGNFKHACGLVTELVVEELSQFLSVQGAAECVPGMIKQTLDLLLECVSQPVEGIARLGCSCLRHLLLSGGPVFTEDLWLIVSEGLREAVHTTLSNLRDLVACFQPGSYSVNGDEGMTVRVVARRDVITADMIRLQQVAEQVFLLDNQVDDSSTHTEDSHAPTNEEDDQRSYVFVLSSVENKEKPENADRVPLRGLLVSLLSHQLLLQTLGSILLDNAESVMAQSSIPGSPGASMESFSSEGAEASLPGLLSYLSPANLSVLFDCLMESHSVAYEFNARPGLRSLVQKLAKLDAPANLLRQSTTAFTCYLHTLFQICKHSGEHFSSSHIKRILTGDRITNNQEKDDDGVKEESVGTPARHNDLLKGDRNVDWIVRRLNEACDQLSSVYVRLYNQYKSDSPGNMSFEVELERSLSLSSTSSPARDTSAWSNNGYADEPLSSPLGRWKLASEKLSRDSKSRHHQQLLEDDIRVIELERQFLKRKEDELLQVNIWTNLVITMLELLLNLPTLQFKAVLPAVFPAVTCLISTGADTKVKQLVCEVVRRVGSIYGIL

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5TH69	Brefeldin A-inhibited guanine nucleotide-exchange protein 3 OS=Homo sapiens OX=9606 GN=ARFGEF3 PE=1 SV=3
Q3UGY8	Brefeldin A-inhibited guanine nucleotide-exchange protein 3 OS=Mus musculus OX=10090 GN=Arfgef3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004365 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20252 all species →	BIG2_C	BIG2 C-terminal domain	Domain	Interproscan
PF16213 all species →	DCB	Mon2/Sec7/BIG1-like, dimerisation and cyclophilin-binding domain	Domain	Interproscan
PF09324 all species →	Sec7-like_HDS	Mon2/Sec7/BIG1-like, HDS	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR046455 all species →	Domain	Sec7/BIG1-like, C-terminal domain	Interproscan
IPR032629 all species →	Domain	Mon2/Sec7/BIG1-like, dimerisation and cyclophilin-binding domain	Interproscan
IPR015403 all species →	Domain	Mon2/Sec7/BIG1-like, HDS	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10663 all species →	GUANYL-NUCLEOTIDE EXCHANGE FACTOR	Interproscan

Gene Ontology

No Gene Ontology signature was detected for ANN11052-RA. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17572	ARFGEF3, KEPI; brefeldin A-inhibited guanine nucleotide-exchange protein 3	-	Protein phosphatases and associated proteins	ko01009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.