Genomic Location: chr5:23589198...23591765
NR annotation: XP_002170800.1, transforming growth factor-beta receptor-associated protein 1 [Hydra vulgaris]
| CDS | |||||
| ANN11096-RA | |||||
| Transcript |
| ANN11096-RA |
| Protein |
| ANN11096-RA |
| Uniprot term | Description |
|---|---|
| A7MB11 | Transforming growth factor-beta receptor-associated protein 1 OS=Bos taurus OX=9913 GN=TGFBRAP1 PE=2 SV=1 |
| A4IG72 | Transforming growth factor-beta receptor-associated protein 1 homolog OS=Danio rerio OX=7955 GN=tgfbrap1 PE=2 SV=1 |
| Q8WUH2 | Transforming growth factor-beta receptor-associated protein 1 OS=Homo sapiens OX=9606 GN=TGFBRAP1 PE=1 SV=1 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00637 | Clathrin | Region in Clathrin and VPS | Repeat | Interproscan |
| PF10366 | Vps39_1 | Vacuolar sorting protein 39 domain 1 | Repeat | Interproscan |
| PF10367 | Vps39_2 | Vacuolar sorting protein 39 domain 2 | Domain | Interproscan |
| PF00780 | CNH | CNH domain | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001180 | Domain | Citron homology (CNH) domain | Interproscan |
| IPR000547 | Repeat | Clathrin, heavy chain/VPS, 7-fold repeat | Interproscan |
| IPR032914 | Family | Vam6/VPS39/TRAP1 family | Interproscan |
| IPR019452 | Domain | Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 1 | Interproscan |
| IPR019453 | Domain | Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2 | Interproscan |
| IPR016024 | Homologous_superfamily | Armadillo-type fold | Interproscan |
| IPR011990 | Homologous_superfamily | Tetratricopeptide-like helical domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12894 | CNH DOMAIN CONTAINING | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0006886 | Biological Process | intracellular protein transport | Interproscan |
| GO:0016192 | Biological Process | vesicle-mediated transport | Interproscan |
| GO:0005737 | Cellular Component | cytoplasm | Interproscan |
| GO:0006914 | Biological Process | autophagy | Interproscan |
| GO:0016020 | Cellular Component | membrane | Interproscan |
| GO:0034058 | Biological Process | endosomal vesicle fusion | Interproscan |
| GO:0005515 | Molecular Function | protein binding | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K20177 | VPS3, TGFBRAP1; vacuolar protein sorting-associated protein 3 | - | Membrane trafficking | ko04131 | deepkoala |
Maintained by Dr. Jiajie She from Prof. Longjun Wu's Lab & Prof. Pei-yuan Qian's Lab
Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)
Hong Kong University of Science and Technology
Clear Water Bay, Kowloon, Hong Kong
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