Gene detail

Detailed information of ANN11188-RA in Leptoseris scabra

Genomic Location: Scaffold_8__1_contigs__length_51692913:26626191...26638294
NR annotation: CAH3151221.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN11188-RA

ATGTCTCTGTTCGGTGCAGGCAGGGAAGATTTTTGGCAAACAACATCCAGGAGCACTATCAGAGAAAGATGCGAGACTATTGTTAACCAAGAACTCTTGAGTGATATAAAGTTCGTCGTTCGAGACTCTCAGGGCGGAAGTGAAAGCAAGACCATTCCAGCTCACAAGTTTGTGTTGGCGATCAGCAGCCCAGTGTTTTATGCCATGTTTTACGGCGAATTGGCGGAGACAAAAGATTCTGTCGAGATCTCTGATTGTGAGTACGAAAGCCTGCTGGAGTTGTTTCGTTTCATTTACAGCGACGAGGCGAACTTGACCCCGGACAATGTGATGCAGTTGTTGTATTTGTCGAAGAAATACATGCTGCCTTCTCTAGCCGACAAATGCTCCGCTTACCTGAAAGAGAACTTGGACGCGCCAAACGTGTTTACCGTTTTGCCAGCCGCACAGAAATACGAAGAGAAAGATCTTTTGGATCACTGCTGGAAGGTGATCGAGAAAGAAACGGAGGAAGCTTTGAGATCAGATGGTTTCGTTACAATCGACAGATCTGTGCTGGAAGAAATGGTTGAGAAAGATTCGTTGACTGTCAATGAAGTGGAGTTATTCAAAGCTGTTGATTGCTGGGCTGAAAAGGAATGCGAAAAGCAAGGCCTTGTAGCAGAAGGCTCTGTGAAAAGAAGGATCCTTGGAGAACGGATCGTGAAGGGAATTCGTTTTCCTGTGATGGAACAAGAGGAGTTTGCCGATGTTGTTCTTGACTGCGGTGTACTTACCAGCCAAGAGTGCTTTAACATAATGAAGTATTTTTGCTCTGTATTAAAGATTCCAGTTGGATTTCCAGAAGTCAAAAGAACAGGGATTCTTCCGGAGCGAGTATCCAGGTTTAAATCTGTAGTGTATAACGGCGGTTGGAACCATTCTTCCAACTACTATGATATGATAGTTTTTTCTGCAAACAAAGACATAAAACTGCATACAGTGCGTCTTTTTGGTAGTAAAAACGGGAAATATTCAGTGGAACTAAGTGTAATAAATGTTTTGAGCGGTGTAGTTCTCGCTAAAATAGAAAAAGGCAATTTTTTATCTAGATACGTACGGGGTAAAATAGGAAATTATCAAGGTTTTGACGTTGTCTTTAAACCTCCAATTGTCTTAATGGGAAATACGTGGTACTCGTTTACAGCGAACATAACTGGTCCTCCCTCTTGGTATGGAGAAAATGGACAGGCGAACGTAGAGCATTCTGGGGTCAAATTTTCCTTTTCTAATAAAGCTAGAGAATACACTTGTGTTCAAACGGGACAGTTCGCAGAATGGACTGTGTGCGCGCTTCTGAAGAGAGACATGTCGATTATAAACGATGAAGATGATGCTTCCAACACGCCGCTCCACTTGGCAGCATTGTATGGAAATGATAAAGTTGCTAAGGAGCTCCTGGAACGAGGAGCTGCTATCGATGCCAGGAACGCCAACCTGTGGACACCGCTTGATTGTGCAGCAGCCAAGGGCTGGGTCGAGGCAGCTACTATTCTGTTAGATGCTGACTGTCCTGTGGACCCCACCGATAAGGCTAAGACCACCCCTCTTCACCTGGCCGCACGTGAAGGTCACGTGGAGATGGTGAAACTGCTGTTGTCCAGGAAGGCAAACATTACACTGACTGACAGCTCAGGACGGAACTGTCTGGACATGGCTATTGAGAATAACCACAAGGAAGTAGCACTTGTTATTATTCAGCATAATGACTGGAGGCAAGCCATGCGCAATAAGACCAAAGAAGGCAACACTATTAACACACCAATGAGAAAATTGATCAAGAAACTTCCTGAGGTCGCAGAGAAAGTATTCAACCGATGCGTGAAAACAAATGGGTACCCTGTGGACCATCCACAGTACGCCATTACTCTTAGCTACGAGTTCCTTGATGACGTCAGTCTTGAGTGGGCAGGTTTCGTGACGTCAGAGGCAGCTGAGCACGAGGAGACTGGGTTGGATGCTGTGATGTACAAAATTAAATCGGCGTTACCCGAGAATGCCAGCAAGCAAGTGGAAATTAAGAGCAATCATCCGCTAATGCTTATGGTCACTAAAGAGCGCGTTAAGCTCCTTAGCCATCCACTTGTGACGTATCTTCTTCGATACAAATGGCGCAGCTTCGGCCGCTATGTATATTACGGCCGGCTTATCTTGTATGGAATATTCCTGTTTTTCCTGACTGGCTACGCCATGCATACGACAAAGAGCATTCCGATAACTGAATGTAAAGATCACGAGTGCACGTGCAATGTAACTTTTGGCACCGGTACCACAGGAAACCGAGTAATGTGGAGAAAGATTGGTAGGCCTGTGGTTCTTACCACGACGTCGATAAGTATATTTTTAGAGGTTATTCAATTTTGTTACGTATGGAGGCTCTACTTGCAGTGGAACAGACTTATAGAATTGTTTGCTTACATCTTCTCTATGGTGTATATCGTGGATGATTATCAACTTGATGAAAAAAGCTTCACAATTTCCAGGGGATCAAGATGTTTTGTATGGCATAACAGTCTAGGTGCGACCGCAGTCTACCTGTCCTGGATCGGACTAGTTCTTGTCATGCGCAAGTTTCCCAAGCTTGGTATATATGTGGTGATGTTCACTGATATCTTCAAGACGTTTGCTCAGTTCTTTGTGGTGTGCTTCCTGTTTATCGTCGCTTTTGGTTTAGGATTCCATATTCTTTTGTATGATCAGGTTCCTTACTCCACTCCTGGTCGAGCGCTGCTTAAGACTACAATGGGAATGTTAGGAGAGTATGAGTATGACACAGTCTACAATGATCATGTGGTACCTCCGGTCACGTGGTTCCTGTACGTGACATTTCTCGTCACTAACTGCATCATTATCATGAATTTGTTGGTCGGTTTAGCTGTAGATGACATTAAGGGAGTACAAGAGAAAGCAGTTCTCAAGAGACTAGCTATGCAGGTGGACCTTGCTTTAGATGTGGAAAAGGCTCTACCAGCCATGTTAAGACAGCGGTTTGCAACAACCCAAGATGTAATTCACCCAAACGCGAACAAGTACTGGACAATATGGTCATTTTGGAACCAAGGGGTCAGTCCTGCAAGAGCGATTAACGAAGCCATGAATCCTGAAAAGACTCCGATTGAGAAACTTCAAACCCACCAAGAGGTCTTAAAGGAAGAAGTGATGACGCTCAAATCGAAACTCAAAGCTGTGCTAGATCACACCACCCAGCTGGAAGCCATGATGAAAGCGCTCATGAAGCATCACGGGATATCTGTGGAAGCGGAGGAAGAAGGCGAGGATGATGACTAG

Transcript

ANN11188-RA

Protein

Uniprot

Gene family

Uniprot term	Description
Q96KE9	BTB/POZ domain-containing protein 6 OS=Homo sapiens OX=9606 GN=BTBD6 PE=1 SV=4
Q8K2J9	BTB/POZ domain-containing protein 6 OS=Mus musculus OX=10090 GN=Btbd6 PE=2 SV=3
Q2LE78	BTB/POZ domain-containing protein 6 OS=Xenopus laevis OX=8355 GN=btbd6 PE=1 SV=1

Gene family	Subfamily
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|BTB

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08005	PHR	PHR domain	Domain	Interproscan
PF00520	Ion_trans	Ion transport protein	Family	Interproscan
PF12796	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF00651	BTB	BTB/POZ domain	Domain	Interproscan
PF07707	BACK	BTB And C-terminal Kelch	Domain	Interproscan
PF13857	Ank_5	Ankyrin repeats (many copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR052076	Family	Transient receptor potential cation channel	Interproscan
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR000210	Domain	BTB/POZ domain	Interproscan
IPR038648	Homologous_superfamily	PHR domain superfamily	Interproscan
IPR012983	Domain	PHR	Interproscan
IPR005821	Domain	Ion transport domain	Interproscan
IPR011705	Domain	BTB/Kelch-associated	Interproscan
IPR011333	Homologous_superfamily	SKP1/BTB/POZ domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47143	TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005216	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0006811	Biological Process	monoatomic ion transport	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan