Gene detail

Detailed information of ANN11365-RA in Nanomia septata

Genomic Location: chr5:43004197...43006306
NR annotation: CAB4000099.1, Transposon Tf2-9 poly, partial [Paramuricea clavata]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
P10272	Gag-Pol polyprotein OS=Baboon endogenous virus (strain M7) OX=11764 GN=pol PE=3 SV=2
P31792	Pol polyprotein (Fragment) OS=Feline endogenous virus ECE1 OX=11766 GN=pol PE=3 SV=1
P08361	Gag-Pol polyprotein OS=Cas-Br-E murine leukemia virus OX=11792 GN=gag-pol PE=3 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17921	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan
PF17917	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00665	rve	Integrase core domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR041588	Domain	Integrase zinc-binding domain	Interproscan
IPR041373	Domain	Reverse transcriptase, RNase H-like domain	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984	PROTEIN CBG26694	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan