Gene detail

Detailed information of ANN11700-RA in Leptoseris scabra

Genomic Location: Scaffold_8__1_contigs__length_51692913:35030903...35031194
NR annotation: XP_015747636.1, PREDICTED: 50S ribosomal protein L20-like, partial [Acropora digitifera]
Species abbreviation LSCAB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3YSX0	Large ribosomal subunit protein bL20 OS=Ehrlichia canis (strain Jake) OX=269484 GN=rplT PE=3 SV=1
Q2GHR2	Large ribosomal subunit protein bL20 OS=Ehrlichia chaffeensis (strain ATCC CRL-10679 / Arkansas) OX=205920 GN=rplT PE=3 SV=1
Q5FH69	Large ribosomal subunit protein bL20 OS=Ehrlichia ruminantium (strain Gardel) OX=302409 GN=rplT PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005439 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00453 all species →	Ribosomal_L20	Ribosomal protein L20	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005813 all species →	Family	Large ribosomal subunit protein bL20	Interproscan
IPR049946 all species →	Conserved_site	Large ribosomal subunit protein bL20, conserved site	Interproscan
IPR035566 all species →	Homologous_superfamily	Ribosomal protein bL20, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10986 all species →	39S RIBOSOMAL PROTEIN L20	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000027 all species →	Biological Process	ribosomal large subunit assembly	Interproscan
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005761 all species →	Cellular Component	mitochondrial ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0019843 all species →	Molecular Function	rRNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02887	RP-L20, MRPL20, rplT; large subunit ribosomal protein L20	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.