Gene detail

Detailed information of ANN11842-RA in Leptoseris scabra

Genomic Location: Scaffold_8__1_contigs__length_51692913:37397219...37406034
NR annotation: KAJ7371685.1, hypothetical protein OS493_023716 [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN11842-RA

ATGTCAAACGTAACAAATCTTTCTGCCATGTTTGCTGGTAATGGGGAGTACGCATATTTGGAAGCGTCGTTACCGCGTCAACATGGCGACAACGTAAGGCTTATAAGCCCTAAATTGCAAGGAGAAAACTGTATGTCAATCATGTATCACATGTATGGGAGTTCTATTGGAAGCTTGATAATCTACATGAAGACAAATAACAATGAAACAGTTGAATGGATCAAAAGTGGCAATCATCCTGATCAATGGTTCGAGGCCGCTGTATTCTTTAATTCTTCTGCTGAGTACCAGATTGTCTTGGAGGGAGTGAGAGGAACTGATTGGGACAGCGATGTAGCCATCGACAACATTATATTCAACGATGGAGCCTGTAAACGACTGGTGACGCAAACGCTATTTGCCTTTGTAAAGAATGATGCTACAGACTTTAAACTCGACCGAATCCCATCTCACGGTGGTTGGGTTAAGCAATTCACGATGCAAGCTCATCAAACGAAAAACAGCTCCAATGATGTGATGTATTTTGTCTATCCAAGAGACGCTCTGAGTTGTGCAAAAAGTGTTACTCGACAGCTGTCACTGGCTGACCTTAACTGCTCCCCTCGCGACTTCTTCTATGCCTCTGACAACTATCAGCCGCATTACAGAAAGGTGATTCTTATTAGCCGAGGAGGGGGGTTGTCTATTGGGATTGCCTTAGATGACTATCACACCTGTTGTGGCAGGTCGATGGAAGAGCAATTTTTCGCTAACGTGTCGTTGCCACGACCTAATTCATGTCCTCCCGGATGGCTTGGTTTGGAAAAATCTTGTTTTCAGGTGCAAATAACTCAACAGAAAACATGGGACGTCGCGCGATTACAGTGCTATAACAAAGGAGGACAGTTGGCTGTGTTTGAAAAAACCATGAGACCGCACTCAATTACTGAGTTTTTCGATAAATACATGATGGAATGGGAAACGTTTTACGTGGGTGGCCGTGCTGCGAATACTGGACAATGGATTACTGTTACGAATAAACTGTTTGATTCTCATTCATCACTGTGGGGACCCGGAGAGCCTTCAGGAGATGGTTTGTGCGGTGATTTGCTTCTTGTTGAGAGCTGGAATCCAAAGTGGAGAATCAATGATGACAACTGCCTTTATAGCGTAGGATTTGTCTGCGAGAAACAAAAGACTGCTGCTGGCTCAAGATGTGAAGATGCTTGGTTTGATGTGGTGAATACATGCTTTCGTATATTTGCTGGCATTCACAGAACATGGGACGGTGCTCGTGACTACTGTTCACGTCAAGGAGGCGACTTAGCCGTTGTGGATTCTGAGACGAAAAGAAAAGCCATTGCTAACCGTATTATCCACATCTACACTACGCGATTATTTATTGGGCTTCGGAAGAAAGGTGCCTCGTGGCAGTGGTTTGGGGGCAAGAATATTTCATCCGCCTTTTGGCATCCTGGGTTTCCAAACAGTGGGGCATGTGTCGCTTTAGACAAACGCTCGCATGATTGGAAACTTTTCACAACGAGTTGTTTCAGCAATCATGGATTTCTTTGTCAAACAACTGAACGGACATTTGTTTCAGGCCGACCGACTAGCCATTCATCGCAGGTCACAACGACAGGAAAATCATTTCATGCTGTTGATGGAAACATCGCTTCTTGCTTCACAATGAAACGGCAACACGGAAAACAGCTTTGGTGGAGTGTAGGTTTTGGTAGAAGAGCCTTCGTGTACAAAATATGGATAATAAACAGACCAGAATGCTGCTTTACTGAAATGCCTCAGCTACGGGTTATTTTAAGCAACAACAAGCAAACTGAAAATGCAGAGTGTAAAGTCTACAATTGGAAAAATCAACTGAAGAGGCTGATGATGTGTAGGCCGTCAATTATGGCAACAAACTTAACGATTCTTGCGGATGAAGCGGCCAATTTGACCCTCTGTGAAGTTTTGATAACTGCAGCAGATGACGAAGAATTCGCTCATGGTGTCCTTCAGGAACTTTGGTATAATATTTTTTCTGGGTCGGTAAACAGTCTGCGTGCTGATAGCAGGTTTCCATATAATCCAGATGTTGTAAACATTCTCCAAGCCTTTGACCCCCCAGTTGACTTCGACTCAGATTACGGACAGCACCTGAAAGCATATTTGCAGGTACTTTTTGCATATTTCTAG

Transcript

ANN11842-RA

Protein

Uniprot

Uniprot term	Description
Q0WYX8	MAM domain-containing glycosylphosphatidylinositol anchor protein 1 OS=Gallus gallus OX=9031 GN=MDGA1 PE=1 SV=1
Q0PMG2	MAM domain-containing glycosylphosphatidylinositol anchor protein 1 OS=Mus musculus OX=10090 GN=Mdga1 PE=2 SV=3
P85171	MAM domain-containing glycosylphosphatidylinositol anchor protein 1 OS=Rattus norvegicus OX=10116 GN=Mdga1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00629	MAM	MAM domain, meprin/A5/mu	Domain	Interproscan
PF00059	Lectin_C	Lectin C-type domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001304	Domain	C-type lectin-like	Interproscan
IPR051560	Family	MAM domain-containing protein	Interproscan
IPR013320	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR016187	Homologous_superfamily	C-type lectin fold	Interproscan
IPR000998	Domain	MAM domain	Interproscan
IPR008979	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR016186	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23282	APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016020	Cellular Component	membrane	Interproscan