Gene detail

Detailed information of ANN11954-RA in Leptoseris scabra

Genomic Location: Scaffold_8__1_contigs__length_51692913:39567284...39590238
NR annotation: CAH3118746.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN11954-RA

ATGGAATTTATGCAGGCAACGGCAAAGTGTAAGGCAGGCGTGAGTGAGCCCGGAGTGGATAAAATGGGAACTTGGACAACAAAGGGGCGAATGGCGTTGATAATCGAGGAGGTTAAAATCTCCACAGTTAACGGCACAGCAGACACCACAGTGGCTGGAATCGAAACTGTCGGCAATCCAGCAGACGAGCTAACAGCTTCATTGGTAGCCATCGTGTTGCACAAAGCGTTGACAACGTTTTGCGTGTTACGTGTTGTAAACGAGAAACAACTTCAGGAACGGTCCGTCCTCTTGTCAAAGAAAGCTAGCGAAGGAATCTGCTGTAGAAAGAACTGGATGATCGTAGAAATCCCGAAAAACAAACAACCAAGCGAGCAAGCAGTACAGGAAGAGGAACTGGAGACAAAGAAAGGAGAATTGCGGGATGAGGAGCACATAGCCAAGCGAAGAACCTTGGGCAACATTCGGTTTATTGGTGAACTGTTTAAATTGAAGATGGTGACAGAGAGCATCATGCATGATTGTGTGGTGAAGCTGCTGAAGAGTAATGATGAGGAGTCTTTTGAGTGCGTGTGCAAGTTACTTGTTACTATTGGAAAAGATCTGGATCATCCGAAGGCCAAGCCGAGAGTTGACCAGTACTTCAATCAGATCAACAAAATAATCCACGCAAGGATAACCTCGTCTCGCGTGAGATTCATGATGCAGGACATCGTGGATTTACGGAACAATGACTGGGTGCCTCGCCGGGAGGACAACAACCCCAAGACCATTGATCAGATTCACAAAGAGGCTGCTGACCAAGCCAAGAAGACACAGATGATGATACAGATGGCTAAACAAGACAAGAAACTGTCTAGAGGGAACATGGGCGGTCGTAACAGTCCTCGAACAGGATCCATTCCCCAGGCCGATGAAACCTGGACCACTGTGGGCAGAGGGCCCAGAAATGTTAGTGTAGGCCCAAAGAGGTTCCGAAACATTAAGCGCCCTGTGGATTCTGAAAACATCTCTCTTGGACCAGGTGGCAGAGGGTATAGCGCATGGGCGAGAGGAAGCAGTGGTGGAACAGGAGCAGTAGGTGCTGGTGCTGGTCCATCGGCAGCTACTGGTACATCCACTGCTACTGCAGCTGAAACTGACAACAGACCTGCCAACAGATATTATAACTTGGCTGGAGAACCCCTTAGTGCAATATTGGAAAGAAGAAGGCGAGGAGTAGGACAATTCCCACCAGGAGAAAGAGAGAAGGCCCTTAAAGCTGTGCGGGCAGTGACACAACCAAAGCGTAATACCCAAGAACGTGATGGAAGATGGGGTTCTCTCACACTGACACCAAAAACAGCTCCAGCTGCTGAGGCTGCAGTCCTTGGTCCAGCAGCTGCTGTTCTAGTGCAGGAACTATCAGAGGAGGCAACCAAAAAGAAAACACTTTGTATTGTCGATGAATACCTGAACATTAGAGATGTGAAGGAAGCAGCTGAGTGTCTCAGAGAGCTTCAGTCCCCATCAAGACATCACGTCTTTGTTGAAGTGATGTTGAACCACACAATGGAGAAGAAAGTATCAGATAGACATGCCACTGGCAAACTATTGCACTTTTTGCTCCGCGATGGTGTCCTCACAGATCAACAGTATCTGAATGGGCTTGAGCAAATATTTGAACTTGCAGAAGACATAGAAATTGATTACCCACATCTATGGAAGTACCTCGGAGAGCTAATGGGTCCTACAGCGTTTGATGGAAATCTTAACCTTGATGAGTTATTTAAATGCGTATTGAAGTATGTATCAAAACTCAAGGCTGCGAAACTGTTTGCTTACATGCTGCAGTCTGCCACAAGTGATACGAGTCAGGAAGATGTGGCTGTCATTTTGAATAGATACAATGTAACAGTGATCTTGTTCTTCGACACTGAGGAGGAAGCCAGAGAATTTGCTAAGGACATGAATATCGAATTTGCTCTTGGACGGGCCAATGCGTCAACCAAGCAACATTCAGCTAGAATAGAAAAGGAGCTTAGGACTCTCATATTGAAGAGAAAAGCAAGCAACGATGAAGTGTTTGACTGGGTTAATAAAAATATTTCCGCTGCCGACACAAAAAAGTCACCATTCATTAGAGCGCTGGTAACTGTGGTTTGTGAAGGAGCGATGGATAAAGAGGAGGGAGGCGTCCGTAAATGCAATGATGAAAGACTCAAGGACAGAAAAACTCTTCTTCGAAAATACATCGACGACAACACGAGTCTAGAGCTTCAAGCTCTTTATGCGGTGTCAGCCCTTTTTGTTAAGCTTGGTTACCCTCCAGGTTTTATCAAGTCATATTTCGATAGTTTGTATGACGAGGAGATCATCGCAGAAGAATCTTTTTACGCCTGGCAAACCAGTCCAGATGAAGAACCTGGCAAAGGCGAGACCGTCATTGCCGCTTCTGAGTTCTTCCGCTGGCTCAAGAGTGCGCCTGAGGAGAACACCGAGGAAAGTTAG

Transcript

ANN11954-RA

Protein

Uniprot

Uniprot term	Description
Q04637	Eukaryotic translation initiation factor 4 gamma 1 OS=Homo sapiens OX=9606 GN=EIF4G1 PE=1 SV=4
Q6NZJ6	Eukaryotic translation initiation factor 4 gamma 1 OS=Mus musculus OX=10090 GN=Eif4g1 PE=1 SV=1
P41110	Eukaryotic translation initiation factor 4 gamma 1 OS=Oryctolagus cuniculus OX=9986 GN=EIF4G1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02020	W2	eIF4-gamma/eIF5/eIF2-epsilon	Repeat	Interproscan
PF02854	MIF4G	MIF4G domain	Repeat	Interproscan
PF02847	MA3	MA3 domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003890	Domain	MIF4G-like, type 3	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR003307	Domain	W2 domain	Interproscan
IPR003891	Domain	Initiation factor eIF-4 gamma, MA3	Interproscan
IPR045208	Family	Initiation factor 4G	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23253	EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0003743	Molecular Function	translation initiation factor activity	Interproscan
GO:0016281	Cellular Component	eukaryotic translation initiation factor 4F complex	Interproscan