Gene detail

Detailed information of ANN12042-RA in Leptoseris scabra

Genomic Location: Scaffold_8__1_contigs__length_51692913:41304218...41320298
NR annotation: CAH3118874.1, unnamed protein product [Porites lobata]
Species abbreviation LSCAB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN12042-RA

ATGGATTCAGGCGAGTGTCCAAAAGGTTTATACAAGAGTACAGTGAGCAATACAAAATGCCTGACATGTCCTGCAAACTCAGTACCTGATACAGAAAGAACAGGCTGTACATGCAATGAAGGATTCTACAAATTGACAGATTTACACGTAACACCTTGTGAAGCTTTGCCACCAGCTCCACTCAAAGCAAACACAACTGTTGTCAAGGCAACAAAGGTTACCATCAACTGGACCAGAGGGCCTGATGACATCAGCGGAAAGCTTCGATATTCTGTGGACTGCTTCAGATGCAACTCTCGGAAAAATAAAGACTGCAAGGAGCCTTGTGGACCGACTGTGCAATATAAACCCAGCAAAGACAATATCACTGGTAACAGTGTAGCAGTGAATGGCTTGCAGTCTGACAGCTTCTTTCTATTCCGAGTTTACTCTGTAAATGAGTTGAACTATCAGGAGAAGGACCGAGATAAATGGAAATTTGCCAAAGTATTTGTGCGTACTAAAGATGCAGAAGAAACTGTTACTCCAACTAAGGAAGGACCAGGTGGGAACTCTATTGATTTTCTAGTCAATTTTCTATCTCTGTTTGACCTTTTGTCTGTTCAGAGTCTATGGCTTTGTTTAATAGATAATCTGATATCTGTTGATCAGCTTATTTCAAAACTAATATCAGCATTTATGGAGGGAGTTGTAGCTTTGAAAGTAATGAGCTTAGAATATGAGAATGGAAAACTTCAAACACGTGCCAACCTTATAATGTATCAGGAAGGTGTTTTAAGTTCACAATTAAAGATGGCTTTGTACATTGGAGTTCCCATTGTACTGCTTCTCCTTGTTGCAATGATCATCTTCGTTGTGTGCATTTGCAGGAGTAGAAGCAAGAGAGGCTACAGTTCACCAGTGGAGTTGAAAGATGGTCAAGGGCACAGGCTGTACGTCGATCCTAGTAATTACGAAGACCCCGAGAAAGCTTTGGAAGATTTTGCCAAGGAACTAGACAAAAAGTGGATCATCTTAGAGAAAATCATTGGAGGAGGTGAATTTGGTGATGTTTACAAGGGAACTTTGACTCGACCTGAAGAAGAGTCAATCCCTGTGGCTGTTAAAACTTTGAAGGCTGGCGCTGCACCAAAGAACCGTAAAGACTTCATTTCAGAAGCTTCTATTATGGGACAGTTTTGCGACCCAAATGTGATATTCCTGGAAGGCGTTATCACAAAAACCTTGCCGTTAATGATTGTGATCGAATTCATGTCAAATGGTTCTCTCGATAACTTTCTCAAGAAAATGGATAGCAAATTAACAGTACAGCAGTTGCTGGGAATGGCGAGAGGAGTCGCCTCAGGCATGAAATATCTATCTGAAATGAATTTTGTACACCGGGATCTTGCTGCTCGCAATGTTTTGGTGTCGGAAAGTATGGTGTGCAAAGTCGCAGATTTTGGCCTGTCCAGAGAGTTGGAGGACTCCGCTTATGAAACAAAGGGGGGTAAGATTCCTGTCAGATGGACGGCTTTAGAGGCGATCGAGTATCGTAAGTTTACACCAGCAAGCGATGTGTGGAGCTATGGAGTCGTGTTGTGGGAGATCATGTCATTTGCCGAACGGCCTTACTGGGACTGGAGTAATTTTGAGGTGATGGATCGAGTCAAGGGAGGATATCGTCTTCCACCACCACTGATTTACCATGGCCAGCTCTCAGCTGATCACGTTGCTCAGTCGAGTAGACCAATCTTCTTTCTCAAGCTTCTGGTCAAAGGATTTCAATGGGATTGTCCTAAGGCAATACACCAGATCATGTTAAACTGCTGGCATGCTGACCGCAGCAAGAGGCCCAAGTTTGCTGACGTAGTTAAGAGGTTGGATGTGCTGATTCGTTCCCCTGACAAACTCAACGAGGCCTCACCTACAGCACCCAATCACCGACTTACCCTCTCCCACCCCACCCCCTTTTCCTCCTCTCTAATGACCATGGCTGATTCCAGGTCTCCAAAGTTGGAGTGCACAGAGCTTACCTCAATCCATGATTGGCTTGTGAGCATTAAGATGGGACAATACAGTGACATGTTCAACAAAGCAGGCTTCACGCACCTGAAACAAGTGGCTACAGAGGACGATCTGGATCTCAATGACATGGGCGTCAAACTAATTGGACACAAGAACAAGATTCGCAAGAGTTTACGAGAAGTCAAGAAAACTTTAAGCAGAGATACCGCCTTTTGA

Transcript

ANN12042-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q91845	Ephrin type-A receptor 4-A OS=Xenopus laevis OX=8355 GN=epha4-a PE=2 SV=1
Q91694	Ephrin type-A receptor 4-B OS=Xenopus laevis OX=8355 GN=epha4-b PE=2 SV=1
P54764	Ephrin type-A receptor 4 OS=Homo sapiens OX=9606 GN=EPHA4 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000240 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14575 all species →	EphA2_TM	Ephrin type-A receptor 2 transmembrane domain	Domain	Interproscan
PF00536 all species →	SAM_1	SAM domain (Sterile alpha motif)	Domain	Interproscan
PF07714 all species →	PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020635 all species →	Domain	Tyrosine-protein kinase, catalytic domain	Interproscan
IPR008266 all species →	Active_site	Tyrosine-protein kinase, active site	Interproscan
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR001660 all species →	Domain	Sterile alpha motif domain	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR001245 all species →	Domain	Serine-threonine/tyrosine-protein kinase, catalytic domain	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR027936 all species →	Domain	Ephrin receptor, transmembrane domain	Interproscan
IPR050449 all species →	Family	Ephrin receptor tyrosine kinases	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46877 all species →	EPH RECEPTOR A5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004713 all species →	Molecular Function	protein tyrosine kinase activity	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN12042-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.