Gene detail

Detailed information of ANN12179-RA in Leptoseris scabra

Genomic Location: Scaffold_8__1_contigs__length_51692913:43730840...43736620
NR annotation: CAH3113177.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN12179-RA

ATGTCGAAAACAGTGGACAAACCTGTCAGCAGTGAAAAGATGCCTTACACTGATGATGGCCCTCCTGAGATGAGTGTGAGTCTTCCTTCCATGGGAGATGTTGAAACAAGAACAGAAGATCCAAGTTATGCTCCACTGCCTGTTGACATTGTGTTACTGACAGTCAACGACTGCGAGTTCTTGGCTTGTTACAGGCAGTTGATCAATCCGTTTAGATGTTGGTTTGACGATATTGGTTACGTGTATTTTGAGGGCCTGGGAGAAGACGCAGATGAGAAAGTGAAAGTTGCTTTAATTCGATGCTGTGAAGGCTCTAGCGGTCCTGGTGGTGCTCTGATTTCCGTGAAGAATTCCGTGAATATGCTCAGACCAAAAGCAGTCATTTCCGTGGGAGCATGCAGTAGTCTCAACCCCAAGAAAGCCAAACTTGGCGACGTTGTTGTTTCAGCAAAATTAATAACGTATGCTTCTAAAGTAGTGACGCAAAATCAAGAACAATGGGCTGGTATGAGAAGTTATGTAAGCAGACGTTTCCTCAAAGTCATCAAGCATACAGCTGAGGGTTACAAGGCTCCTCTACAAAGCTCACAGTCTCGAGGGATCAAAGTTCATTGCGATGGAGAGTTCCTGAGTGGCCCCGAACAGGTCCGTGCTGAGTGGCGGCGCAACCAACTGACCGAGTCTCATCCTCAGGCAATTGCTCTTGAAATGGAAGGTGAAGGAGTGTTTACTGCAGCATTTGATGATCAGACTGAGTGGCTTATTGTGAAAGGAATAGCTGATTATGCAGATGGTGCCGAGTCAACAACAGAGAGTTGGAGTCCTTTTGCTAGTGTGATGGCAGCCTCTGTTGTAGCACACATTTTAAGGGATCCTAATGTTTTCCGTACGTGGCCCCATTATCAAAGTGAAGATAATGAAGCTTCTTCCAATTGCCGAGGCTCAACTGAAACAGAACGCGGAAGAAAGCGGAAGCGGACTGATCAGCATCCGGGCGCAGATGCAGGAGCTTCACAAATAAGCAACTTTATACAAAGGATCCGTCAATTCTACCAAAGACGTGAAGCCCAGGTTTTGCCAGTTCCTTGGCATGAAGATTTTTGCTTCCATCTGGAAGACCTTTTCACCAGACTTAAAATTGTTGAAAAAGAAAAGACACGTGGAATGCTGAAGGATGAAATCACAAACATGACGGGTATCTTTAGAAGACACAAAGATTGCCAAAAGCCAAGGATCGTCCTCATTGAAGGTGAACCTGGCATGGGAAAGACGACCTACTGTCAAAAGCTGGCGTATGATTGGGCGACTAAACAAGATAATGAATGGGACGAGTCCTTCCCCAAAATTGAAGTGCTGTTGCTTCTCAGATGTCGTGATATTAAATCTAGCATATGGGAAGCTATTGACGAACAAATTCTCCCTGACGATCTTGACAAAGAAGCTAAAGATATTGTTCTTCAATTCCTCCGAGAGAATCAGTCCAAAGTACTTTTGGTGCTCGATGGATTAGATGAGGCGGAACCTAGCAAACTAGACATGTACCTTAAATTAATTCAGAGTAAAGAGTTTTCTGAATGTCACATTGTTCTCACATCTCGTCATGAAGCTGGAAAGAAAGTGAGGCAATACTGTGATGCATTATGGGAGATAGCAGGTTTCACCGTAGAAGATGCGAAGATTTTCATAAGAAAATATTTCCAAGAAAAGGAACACTTAGCTGAAAAGCTTATCAGAAACATTTGGCCCTCTCTTTTTGATGATGTTGCTGTCGTACTACAAGGCTTATGGGAACTGACGAATAATCCACTTAATACAACCTTACTCTGTGTTCTTTTCGAGGATTTTAACGGTGATTTGCCAAGCAACAGAACACAATTATACATCGAAATTGTCCTATTCGTTTTGCAGAGATACGAAAAAAAGAACGGTTTGTCAAGCAACAGTGGAGACCTTATTACAGTTTACAAGAAAGACCTGATACTCCTCGGGCAGATGGCGCTAGAATCTCTTCGTAAAAGAGAATTGCATTTCGAAAAACAGGAAAGGGATTTCCAAGGAAGCCCTTTAATCAAGTTCGGATTTCTTTCAATCCAGACTGGTGGTAGTAAGAGAATACCTTGCATACGTTGTGGGTTTCTTCACAAGTCTTTCCAAGAATTCTTTTCCGGCCTTTATCTTGCGTTTCAGATTCTCGACGGAGAAATTGACTATGCCTCAGTACTGACTGATGGAAGATATTGGGATGAACTGTATGAAGTTTTCAGGTTCATGGGTGGAATCGTAGCCTTAAGGAGTGAGGACGCCGCAGTGTCTCTTGTAAGTAGTTGGGTTGAGCATATAAATTTCAAAAGCTCCACCTCTAGCGCTGACCTTCGTAGCGATCTATTATCTGTCTTCGTCTGTGTATCGGAATGGACGGTCCATAACGAAAACTTTCGTGCTCAATTAGTTGATATTTTAGGAAAGCACCTTGATCTCTCTTTTGTCACTGAATTGGATTTAAGTCTATGTAATTTTGCTTCTGATACCGTCACTAAATCCCTTTCCCAGGCCCTCACAGGCTTCTCCCTGACTAATTTGAATTTGGAAGGAAGCAGAATTAGTGATACCGGTGCTGAGTCCCTTTCCCAGGCTCTCACAGTAAACTCTTCCCTGACTAATTTGAATTTGAGTAGGAACAGTATTGGTGAAACCGGTGCTGCATCCCTTTCCGAGGCCCTCACAGTAAACTCCTCCCTGACTAATTTGAATTTGGGCTACAACAGGATTGGTGATCCCGGTGTTGAATCCCTTTCCCAGGCCCTCAAAATGAACTCCTCCTTGACTAATTTAATTTTGAATAAGAACAATATTGGTGATACCGGTGCTGAATCCCTTTCCCAGGCCCTCACAGTAAACTTCTCCCTGACTAATTTGAATTTGGGCTACAACAGGATTGGTGATCCCGGTGTTGAATCCCTTTCCCAGGCCCTCAAAATGAACTCCTCCTTGACTAATTTAATTTTGAATAAGAACAATATTGGTGATACCGGTGCTGAATCCCTTTCCCAGGCCCTCACAGTAAACTCCTCCCTGACTAATTTGAATTTGGGCTACAACGGGATTGGTGATCCCGGTGTTGAATCCCTTTTCCAGGCCCTCAAAGTGAACTCCTCCTTGACTAATTTAAATTTGAGTATGAACAGTATTGGTGATCCCGGTGCTAAATCCCTTTCCCAGGCCCTCACAGTAAACTCCTCCCTGACTAATTTGAAGTTGAGCTTCAACAGTATTGGTGATCCTGGTGCTAAATCCCTTTCCCAGGCCCTCACAGTAAACTCCTCCCTGACTAATTTGAAGTTGAGCAACAACAGTATTGGTGATACCGGTGCTGAATCCCTTTCCCAGGCCCTCAAAGTGAACTCCTCCTTGACTCATTTGTATTTGGCTATGAACAGTATTGGTCATACTGGTACTGAATCCCTTTCCCAGGCCCTCAAAGTGAACTCCTCCCTGACTAATTTAAATTTGAGAATGAACAGTATTGGTGATCCTGGTACTGAATCCCTTTCCCAGGCCCTCACAGTAAACTCTTCCCTGACTAATTTGATTTTGAGTAGGAACAGTATTGGTGATCCCGGTGCTGCATCCCTTTCCCAGGCCCTCACAGTAAACTCTTCCCTGACTAATTTGAAATTGAGCTTCAACAATATTGGTGTTCCCGGTACTGAATCCCTTTCCCAGGCCCTCACAGTAAACTCCTCCCTGACTAATTTGAATTTGGATAACAACAGCATTGGTGATCTCGGTGCTAAATCCCTTTCCCAGGCCCTAAAAGGGAACTCCTCCTTGACTAATTTGGATTTGAGTCACAACAGTATTGGTGATACCGGTGCTGAATCCCTTTCCCAGGCCCTCACAGTAAACTCCCCCCTGACTAATTTGGATTTAAGAAGGAACAGTATTGGTTATAAGGGTACTATTTGCGTTTCTGAGGCTTGTAAGTTTAAAAAAACTGTTAAGGTTGAGTTATAG

Transcript

ANN12179-RA

Protein

Uniprot

Uniprot term	Description
C3VPR6	Protein NLRC5 OS=Mus musculus OX=10090 GN=Nlrc5 PE=1 SV=2
Q86WI3	Protein NLRC5 OS=Homo sapiens OX=9606 GN=NLRC5 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01048	PNP_UDP_1	Phosphorylase superfamily	Domain	Interproscan
PF13516	LRR_6	Leucine Rich repeat	Repeat	Interproscan
PF05729	NACHT	NACHT domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR027038	Family	Ran GTPase-activating protein	Interproscan
IPR035994	Homologous_superfamily	Nucleoside phosphorylase superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR000845	Domain	Nucleoside phosphorylase domain	Interproscan
IPR007111	Domain	NACHT nucleoside triphosphatase	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24113	RAN GTPASE-ACTIVATING PROTEIN 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005096	Molecular Function	GTPase activator activity	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0009116	Biological Process	nucleoside metabolic process	Interproscan