Gene detail

Detailed information of ANN12324-RA in Leptoseris scabra

Genomic Location: Scaffold_8__1_contigs__length_51692913:46634203...46648715
NR annotation: XP_015768198.1, PREDICTED: chordin-like isoform X1 [Acropora digitifera]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN12324-RA

ATGGGACTTGCTAAGGATCGCTTAATGATGGTGATTTTGGCCTTATTAATCTTCGTGCCACTCTGTTCGGCGTCTGAGAGCAGGTTAATCTATAAGCCAGTGGGGAGAGAATATCAGCCTGTTTCTTCTAAGCCAGGAGATAAAGCAATCAATTGTATTTCCATTTGTCATCTTTTGACAGGCTGTAACTTTGGTTATCTGCATTATAACATCGGAGATACCTGGCATCCGGAGATCACCCCTTTTGGAGTCATGTTTTGTGTTATCTGCACGTGCAATAAGATTTCAAACTCTGCAACAAGTGGCAATGGAAAGGTAGCATGCCGCAACACAAGAAACCGCTGTCCAACAACATCGTGCGCCAGGCCGACAGTTGAGCAGGGACATTGCTGTGCATCCTGTCCTGACGAATTTGTGTCTTTACTAACGACACCAGGAACCTCCAGTTCCCGCCAAAATGGTATTGCGCGTGCGCACTTCACTCTTGTGCGCAACACACTTCACATTTCACTTCGATATGAAGGGCCTCGGAAACTCCGCATGGCAACATTTGTGGATACAGAAGGTTCATTAATAAAAGAAGTAAACATTCAGCGAAAAGCAGTGAATGGATCTCAGGTTTGTCTGGTATGGAATCAGATGACAACAAAACAGATTCAATCCCTCAAACAAGGACAACTCAGCTTGGCTTTAAAACTCAAAAGACAACACACAGCTGGTCTTGTGGGGGCTATTTCCTTGTATAAATCTTACTCGGAAGAGGGTTTCGAGGCACTGCTGTCTTCAGGCGATCAGAAGTCCATCGCTCTAGCTTCCTTTAACTTGGCCAGGAATGGGAAGACACTTAGGATACAAGTTCGGTATAACGGATCTCACAATGTAGGTCCAACAACTCAAGCGACAATCAAGTTCATAAGGAATCCCACGAGTAACAGAGATGCTCGAACGGTCAAAGTAATCAGCGCATCTAACATCAGGAGGGAGAATTCTAATTTCAAAGCGTCGTGGTTGAGCCCAGCTGAACAAACGCTTAAGTGGCTGTCACGTGGTCTTGTAAATATCACAGTAACATTGAACACCGCTGGACAATCTGTTCAACTTATTGGACGTGTAGGCATCAAGAAGACATCCATTGTTTCTCAGCTCTCCGGGCGAGACGCTCCTAGGCCCACAATGACAGGAGCCAGCGGCTATGCCTCCTTTGAAATTGACAATCAAGGTCAAGTACATTACCAGATATTTCTTTCGGGTGTGGCAAGTCCTGTCGAAGAAATCACTCTTCAGGCAACGAACCACCGACGCACTGTTAAGAGACTGTCACGAGCAGTCACTACTGATGAACACGGTCGAGCAAAGGTTGCAGGTGTCTGGGAGCGACCCTCATTCACAGAAACATCCTGGTTATTCAATGGCAACATGTTCATCAACGTTCGTACCACAGCTAACAGAAATGGGGAGATACACGGCAAACTGAAACAGTTTCCTTACAGAGGACATCACTTGTCATATTACGATGCACCAGTATTATTAACTGGTAACGAAGTAGTTCCCAGGATCCAGACGGGCGCGGCCGGGCAGGCCTGGTTCTTACTCGACAAAAACTGTGCTTTGCATTATCACTTGATGCTCAGTGGCATGGACCGCGGGCGCAGGAACTTGGTAACCGCGGAACTCCAAGGTTTTGCTGACTTCGGAGAGGTTCCTGAGCCTTACGATGAACACGTGCACTTATTACGGGAATTCGAAGGACAAATGGTCTCTGGAGCCGCACGCAATCTCGAACCAGAATTCCTGGCGAACCTTGTCCGTGGATTGGTCTACCTGCAAGTCAGCAGCGAGGAGGTCCCTCAGGGAGAGTTGAGGACCCAGGTGTTGGTGAACAGCGATGCTTGTAGTCGGCGGTTTCCTCATTTGCAGCAGATAAAATCTAGTGTTGGCTCCTGTTACCATGGTGACAAGGAGTATTACGACGGAGAGAGCTGGACACCTGAAGATGACAAGTGTACCTCCTGCGCCTGTCAGGATGGTGAAATTATTTGTTCAGTTGTCCAATGTCAGCGGTTAAATTGCACAGAAGCACCTATCCTATTACCTCATTTATGCTGCCCCGTTTGTCCAGTGGTGGAAGAAAAAATTGTTATACATTACGAAAAGAAGAATCGACCATCATTAAAAGGTTGCTACGTCAAAAGAGACCGAAAAGTCTACCCCGTAGGCACTGTGTGGCATCCGTTCGTACAACCATTTGGTTACATGAGATGTCACGCCTGCACTTGCATGGAGAACACCGAGGACATATTTTGTACTAAAGTAAAATGCCCAGAGCTTCATTGTAGAAATCCAGTCAAACTGCGTATGACGGACTGCTGCATGCGATGCCCTGACGAGCAGTCAGACGATGTTATAAACGTCAAAAAAGGCAACAAAGCTTGTGATTTCCGCGGAAGTAAGTTCAAAGATGGGCAAACGTGGCAGCCATATTTTCCACTGATCGGTCTTTCCAGATGTATCACATGCAGATGTGAGAATGGTATATCCAGATGTAAACGTGCCCCTTGCCCCCAAGGACTTTGCCCAAACTCCATTGACGGCTCCATGAAAAGTTGTTGTGTCCCGTGTTCAGGTAAGCGACATGCGTGTTTATTGTAA

Transcript

ANN12324-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O57472	Chordin OS=Danio rerio OX=7955 GN=chd PE=2 SV=1
Q91713	Chordin OS=Xenopus laevis OX=8355 GN=chrd PE=1 SV=1
Q9H2X0	Chordin OS=Homo sapiens OX=9606 GN=CHRD PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008553 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07452 all species →	CHRD	CHRD domain	Domain	Interproscan
PF00093 all species →	VWC	von Willebrand factor type C domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010895 all species →	Domain	CHRD	Interproscan
IPR052278 all species →	Family	Chordin-like dorsalizing regulators	Interproscan
IPR001007 all species →	Domain	VWFC domain	Interproscan
IPR016353 all species →	Family	Chordin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46526 all species →	CHORDIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0009953 all species →	Biological Process	dorsal/ventral pattern formation	Interproscan
GO:0030514 all species →	Biological Process	negative regulation of BMP signaling pathway	Interproscan
GO:0036122 all species →	Molecular Function	BMP binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007275 all species →	Biological Process	multicellular organism development	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04657	CHRD; chordin	-	TGF-beta signaling pathway	ko04350	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.