Gene detail

Detailed information of ANN12379-RA in Leptoseris scabra

Genomic Location: Scaffold_8__1_contigs__length_51692913:47769614...47799542
NR annotation: KAJ7393481.1, Hermansky-Pudlak syndrome 3 [Desmophyllum pertusum]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN12379-RA

ATGAATTTCTCCCTGAGCGTTAGACCTAGTAAGGAAATGGGAGATCAGCCTAACTCACGCGGCCACGACCCGTCGAATTGTATCTCCATTACCACCAAACGCCAATTCACAAGTGTACCAGAATCGCAAGCAAGAAACTTTGTTCCATCGCTGTTTCTATCAAACGTGATGTCGCTCGCACCAAAAATTGATGAAGTAAGCCACGTTGTTCAAAATGCTAATTGCGACCTTGTTTGCATTACGGAGTCTTGGCTGCGTCAACATATCCCGGACTCCGTAATAGCAATTAATGGTTATAATATCATCAGACGGGACAGAAAGGAGGCCACCCACGGAGGAGTGTGTATGTACATTAAGGAAACCATCCCCTTTTCTGTTCTCGATCTTTCCGAGGTCGACGAAAATCCGGTCTTTGATTTTGAAGTCCTGTGGGCAAAGCTGCGACCAACTCGACTCCCTAGAGGCTTTTCTAGTATTATATCTGGAGTTATATACCATCCACCGTCAGCTCCTGACTCGAAAATGCAAGATTATTTATTAAAATGCCTTACATCAATTGAGTCTCAACATCCAAACAAAGGAATTCTTCTTGTCGGCGATTTAAACCACCTAAACGAAACGTCTCTTAAATCTAACTTCAATCTGAAACAAATTGTTCACTTTCCAACCAGAGGGAAAAGTTTCTTGGATCGTATTCTATCCAACATGAAGGAGTTCTATGATAAAGTCATTGAGCGACCTAAATTTAGCCTTTCGGATCATAGTTCAGTGGAGATCCAGCCCAAGCTTCGAGCAAAACCATCGCAATCAAAGGAAATAATTATCTCGAGGGATTTGAGACCTAGTAAAAGACACGCAATGCAAATTTACCTTGAAAATGTTGACGTACCACGCCTCCTTGACACCGTGGAGACCTGCGCGGAGAAAGTGTCACTATTGGCCTCGCGCACGCTACTGGTGTACACGACCGTAAATTCGGCTTTAAATTACTGTAGTTCAGCTATTCTAAATCAGACTGTGTTAAGATTTGTACACAACTTAAAAATATCAAAGATATTTCCTCTGGAACGTGCGCAAGGCCTATTTGAAAATATCGTTAAGATGGGCCTAGACTTTATTACTCCCCCGCGATCCAAAACTATTCTTCGAAGCGAGCCTCCATGGTTGAATGATAAACTCAAGAACTTGATCAAACGACGCCAATGTGCCCTTGCAAAAGGAAATATGGATACCTTTCGAATGCTCAGAAATTGCGTGAATCGTGAGCATAAGATCTGCCGGGCAAAGTATTACGAAGCAAAGGTTAGCCATTTGAGGGAGTGTAAGCCATCTGTGTGGTGGAAAGAGGTGAAAAAGCTCAGCGGCATGTCTCCTGCCTCAGAAACGCGGGACAACACCAGCAAATTACTGCAACACCTAGGTTTTTCACCTGGTGTCCTGGCAAATTACATCAATTCAGCGTTCCTGACCCCAATGCAGGATTTTGAGCCTCTTACCCACAATCCTTTTGACCCACCACAAGCCAACAACGAAAGTAATGCTGTAAATATGATATCGGAGTTTTCAACTTTTATGAAACTATCTGCACTCAACCCCTCCAAAGCACGTGGGTCAGACGGTATCCCGGCATGGTTATTAAAAGAAAATGCTGATCTCCTGGCGGGTCCAGTCTCTGCAATCCTCAACTCCTCGTTCCACGAATCCCGCCTTCCGCCTTCTTGGAAAGAGGCTGACGTAGTCCCGGTCCCAAAACAAAGGCCTATTAATGACATTAACAAGCACCTCCATCCGATTTCCCTTACGCCTATCCTGTCTAAACTCGCTGAAGATCACATTGTTGAGAAATACGTTAAACCTGCTGTGTTACAAAGAATTGACCCTCGACAATTTGGAACTATTCCCAAATCGTCTACTACACATGCCTTGATCAGTATGACGCATAATTGGCTTGTTAACACCGACGGAAATGGTGTCACGGCAAGAGTAGTCCTTCTTGATTTCCGTAAGGCCTTTGAACTTATCGATCACAGTGTTCTTGTTCAAAAACTAACAACATATGATATTCCGAGTCAAGTCAAAGGTTGGATCGTTGACTTCTTGATGGACCGGAAACAAAGAGTTAAACTTGCTCAGGATTGTCACTCTGAATGGCGCTCTGTGCCATCCGGTGTCCCCCAGGGAACAAAACTGGGCCCCTGGTTATTTCTTGTCATGATTAATGAATTGGACACACCAGTTGACATGTGGAAATACGTGGATGATACATCTTGTTCCGAAATAGTTACAAAGGGTAGTGAGAGCAAACTCCAAGAAGCTGTGGATGACCTTTCGAGACAAGCGAGTCTCGATGGGTTCCAACTGAATGAGGCCAAGTGCAAAGAACTTCGAATTAGATTCTCCAATAGCAACCACGATTTTGAACCCCTAGTCCTAAATGGCAAACCCATTGAATTAGTCACCAGTGCCAAATTGCTAGGCGTGACCATTAGCCACGATTTAAAGTGGAACATGCACAGCTCTGAACTAATTAGAAAATGTTCCTCTCGTCTCTACTTTTTACGTCAACTCAAGAGATCCGGAGTGGCACCAAGTGAACTGGTGCAATTCTATGTGACATCTATTAGGCCCGTCCTGGAATACGCAAGTCCTGTATTCCATCGTTCTCTACCAAACTACATTAGTGTAGATTTGGAACGGATCCAAAGAAGGGCATTCAGAATCATCTATCCTGACCTGTCATATAGTGTAGCACTAGAAACAGTTGGCCTACCGAAACTTCATGAGAGGAGAGAAAAGATTTCAATCGATCTGTTTGACGAGATCGTCTGTAACCCCACCCACAGTCTCCATTGCCTCCTCCCTCAAAGGAAGAGTTGTAAATATGCACTGAGACGCAAAAGTGATTTCACTCTCCCCCTATGTAAGACCGAGCGTTTGAAGAACAGTTTTATTTTTAGCCATGTCTATAAGATGACAACAACATCTGGATGGGGCCTGGAAAACCTAATGCAACACACAGAACAAAGCCAACAGCAAGTTAAGGATGATGGCTGTGTGTTATGGTCATTTGATGACTGTTCACCTGTATCCTGTTCAGTTCAACCACTGGCAGTAAAGTCAGATGAAGATGTTATGTTTCCAACCATTAGGAAAGAAAAGGTGTTCAAAGATTTCTCACCAGATCCCAAGGAAGTATTAGGGCCCGTGTCAGAGGTGCCTGGGTACCCTGTGACTGTAACATTTGGAGGGTTGCATGGTATTGGTATTGCTGTGGATGGACACATGTTGAAAGTCAAGGGTGTCACCATGTTGTATCGCAGATTCAGAGTTGAGCAACTCAGTAATGATGGAAATGACTCTGCCACACTTCACACACTGCAGCTGTTACCAACTTACACACAAGGTATCCCTCACATTCAAGAGATGCAGAAAACTCCACTGGTGCCAAGAAGTGTATCGGACCCCACCCTGTGTGGAATGTGCTGCCTTATCTCAGGTCCCAAAGAGGGCTTCATGTATGATGTCTTCAACACCTGCAAGCTGGTGTCCTACTACAAGTACTCCTGTGATACCATCAGTGTATCGGCGTGCAGCAGTCTGCTACATGCAATAACCAAGCAGGGGATTGAGACTTACACTGTGCGTATGTATGCAGCTGCTTCTGATTGGATCAGAACAAATGCTCCTGTTGATGTAAAGCTCGATCAGCAAGTGGTAGAAGAACATAGTGATGCAGAGCAGCAAGAAAAGCCTGCTGATGAAGTTAGTGAGGCTGAGCAAAGCTGCCAAGACTCAGGGAGTAAAACTGCTGTGGAATTTTCAGTTGGTTGTCATTCTGAAGCTTTACCGAGTTCAAATCCTGATGCTGTTTCCATTAAAAGTGCTGACTCAGGAGACAGTGCAAGCAAAGTAAGAGAAGACGTTAACCAAGAGCTTCACAGTGACAGTCCAGTAAGTGTGACAGAAGGTTCACCACAGACATCTGATACCAGGCTTTCAAACGTTGAATCCATAGACGTGGAAACTCCTGTGCAGAAGACGAACCCATCAGAAAGTGAACTTCCTCAGAAGTCTTCACCAGGAAGCAAAGACGACAACTCGTCACCTTCAGACGTCAAACTTTCAGTTGACAACTCAGGAAGAACTCTTGTAAGGTTCACTTCAGGGAATAGGTCATCTCCTCCAGCAGTTCCCGGGAAAGGAGCTTCTTGTGAAGATAGCCAAGGGAATGAAAGTAATCCAGAAGTTACTGCAATTCAGTGCACAAGGGCTTCTGCATTAATGAATTCTCTGAGTCGTAGCAGTAGTTCTGGCATTAAACTGAGTGAAGCAGCTTACCATGCTGCTGTGAACAAGCTTTCAAGTGACTGTGGTTGGGCATTCCCTGTATTTGATCTGCAAAGTTTGAGACAGCGCTGTCCACAGTCCTCGCTTGACATCTGTTTGATTGGCATGTACCCATTTGTTGGATCTCAGTATGTGTCGGCAACTGAGGGAAGCGTTGTGCTGTTTACAAGAGCATCACATGATGCTTTACAAAGAAGCAGAAGTTTTAGAAACAGACCACCAAAGCCTCAGCAAGAGCAAGCAGACAGTGGTAATGCTGACTGGACAGTGTATGTTCTACAGAACATGGAACCAACACAGCTTTACAAGGCTGTGATGCCATTAGCAAATCGTTGTCAGAAGCACAATGCACAGGCATATCACCATCTTGTGTGCGAGCAGCACTTGTTTCTAAGAACACTGTGCTTGGCTGACTCCAGTGTTAAAGAAGACAGGAAACAAAAGAAACTGAGAAAGCTGCTCTGTGAGTCTGCAGCAAATCTGGCAGAATTATTTGCAAGGATCCCAAGTGTTTACCAAGACAGTGCTGACTACTTCAACATGTCTGGCATGACACTGCGGGACATTGTAGACAGAGCCAGCAAGTCAGGACAGATTGCTGCTGATGGTTTGATCCACTTTTTAGATGAAAAGCTGCTTGGTTCAGATGAACCAGTTACTGTTTCTGAGAATACAGCCAAGAAAATTTTCAAGTTGTATTCAAAAGGGAAACCCAGTCGCATTGCAGAGATTATTCTCATGTCCTCACTTAGCGGGTTCTCTTCAGACACAGCATTGGCTGCTTTGGAAGGTCTGAAGAAGGCTAAAACGAAAGAAGATGCAGTCGTCTACAGTCTGTCCCCACTGGACAACCTTGTGCGAGCCGTGTTGTACCTTCACCAGTGTGAACCAGATCATGCCCAGGCAGCTCTGCGCTCCATTCCTAAGAAAAGACTTGTAGAAGTTTTGACTACACATTTTTATCTGTTACATGAGGATGGGTTGCGCTTCACACCACTTGCACAGCTCTTAAGGAAACATGAACAGGCGGTTTTCATGGAAGTGCTTCTACGTCTGCATGATGAATATGTGTTGTCTTTGGATACCCTTCTTACCTTGTTAGGGACTAGCAAACCAGATGCAGTCCACAGTGAATTGGCCATTGGAGTTTTGGAGGCTGTGCTTAATGATAAAAGCAGAGTCGGTTCTTATGCTGCCACGGTGATTCCTTTGTGTGGAATCTATCTGGAGAGAATCGGACGAACTCAAAGGAAGCGCCAGTTGTCTTCATCTCATAACCACGTTCCAAAAGGCGAAGGACATTTTGGAGTCCGTCATTCATGGCTAAACAAACTGCCTCCATTTCAAGGTTCGTTATCTCTGCCAGTCCCAGGCTGCCCCAGTTCCAAGCCAGTCTCTCCCCAGGGCTCCCCTCAGCTGCCTCGGTCATCTTCATTGTTTTCCAGTCCCTCGCGGCGAACAGCTGGCAAGGCTGCTTGTCATGCACCTCTGCTGAGTGGAGACACAGGAGTGAGCGTACATGAATGCTGCTGCTGTTGTTGTAATGCGGATCTCATCAAACTTCAGGCACTGCTCTGTTCCCACTTTGTGAGCCGTGAGTTGTGTGATTTTGTTCTGAGCAATATCGAAGGCCAGAGAACGGACTTGACTTCTGTATCGCTTCTTTGTTTGCCACATGTCGACAGACACACTGAGACTGTTGCTGTCATTTTACGAGAGTTTCCTGAAATAGCATTACCTTATGCAGAACACTATTTTGGTAAAGATATTGACAAGTGGTCCTATTTGGTGAAAACGTTGCTTGACATGTGTAAAGAGGAACCAACCAACGATGATTCTGAATCCAAGAAAGAGATCATTGTAGCCGTCCTTAAAGGAACACTCCAGCAACTCTCCACAATCGTGACTCCCAGTGAGTTCCTGGCCCTGTTGCCTGATGACGGGTGTGTTGGTTTCTTCCTGCCTTACCTGCAGCAGTGTTACAGTCGGTGCGCATCAGATTCAGTCAGCGAGAGACTGGTAACGAGAACAAGGCAACTCGCTACTTAA

Transcript

ANN12379-RA

Protein

ANN12379-RA

MNFSLSVRPSKEMGDQPNSRGHDPSNCISITTKRQFTSVPESQARNFVPSLFLSNVMSLAPKIDEVSHVVQNANCDLVCITESWLRQHIPDSVIAINGYNIIRRDRKEATHGGVCMYIKETIPFSVLDLSEVDENPVFDFEVLWAKLRPTRLPRGFSSIISGVIYHPPSAPDSKMQDYLLKCLTSIESQHPNKGILLVGDLNHLNETSLKSNFNLKQIVHFPTRGKSFLDRILSNMKEFYDKVIERPKFSLSDHSSVEIQPKLRAKPSQSKEIIISRDLRPSKRHAMQIYLENVDVPRLLDTVETCAEKVSLLASRTLLVYTTVNSALNYCSSAILNQTVLRFVHNLKISKIFPLERAQGLFENIVKMGLDFITPPRSKTILRSEPPWLNDKLKNLIKRRQCALAKGNMDTFRMLRNCVNREHKICRAKYYEAKVSHLRECKPSVWWKEVKKLSGMSPASETRDNTSKLLQHLGFSPGVLANYINSAFLTPMQDFEPLTHNPFDPPQANNESNAVNMISEFSTFMKLSALNPSKARGSDGIPAWLLKENADLLAGPVSAILNSSFHESRLPPSWKEADVVPVPKQRPINDINKHLHPISLTPILSKLAEDHIVEKYVKPAVLQRIDPRQFGTIPKSSTTHALISMTHNWLVNTDGNGVTARVVLLDFRKAFELIDHSVLVQKLTTYDIPSQVKGWIVDFLMDRKQRVKLAQDCHSEWRSVPSGVPQGTKLGPWLFLVMINELDTPVDMWKYVDDTSCSEIVTKGSESKLQEAVDDLSRQASLDGFQLNEAKCKELRIRFSNSNHDFEPLVLNGKPIELVTSAKLLGVTISHDLKWNMHSSELIRKCSSRLYFLRQLKRSGVAPSELVQFYVTSIRPVLEYASPVFHRSLPNYISVDLERIQRRAFRIIYPDLSYSVALETVGLPKLHERREKISIDLFDEIVCNPTHSLHCLLPQRKSCKYALRRKSDFTLPLCKTERLKNSFIFSHVYKMTTTSGWGLENLMQHTEQSQQQVKDDGCVLWSFDDCSPVSCSVQPLAVKSDEDVMFPTIRKEKVFKDFSPDPKEVLGPVSEVPGYPVTVTFGGLHGIGIAVDGHMLKVKGVTMLYRRFRVEQLSNDGNDSATLHTLQLLPTYTQGIPHIQEMQKTPLVPRSVSDPTLCGMCCLISGPKEGFMYDVFNTCKLVSYYKYSCDTISVSACSSLLHAITKQGIETYTVRMYAAASDWIRTNAPVDVKLDQQVVEEHSDAEQQEKPADEVSEAEQSCQDSGSKTAVEFSVGCHSEALPSSNPDAVSIKSADSGDSASKVREDVNQELHSDSPVSVTEGSPQTSDTRLSNVESIDVETPVQKTNPSESELPQKSSPGSKDDNSSPSDVKLSVDNSGRTLVRFTSGNRSSPPAVPGKGASCEDSQGNESNPEVTAIQCTRASALMNSLSRSSSSGIKLSEAAYHAAVNKLSSDCGWAFPVFDLQSLRQRCPQSSLDICLIGMYPFVGSQYVSATEGSVVLFTRASHDALQRSRSFRNRPPKPQQEQADSGNADWTVYVLQNMEPTQLYKAVMPLANRCQKHNAQAYHHLVCEQHLFLRTLCLADSSVKEDRKQKKLRKLLCESAANLAELFARIPSVYQDSADYFNMSGMTLRDIVDRASKSGQIAADGLIHFLDEKLLGSDEPVTVSENTAKKIFKLYSKGKPSRIAEIILMSSLSGFSSDTALAALEGLKKAKTKEDAVVYSLSPLDNLVRAVLYLHQCEPDHAQAALRSIPKKRLVEVLTTHFYLLHEDGLRFTPLAQLLRKHEQAVFMEVLLRLHDEYVLSLDTLLTLLGTSKPDAVHSELAIGVLEAVLNDKSRVGSYAATVIPLCGIYLERIGRTQRKRQLSSSHNHVPKGEGHFGVRHSWLNKLPPFQGSLSLPVPGCPSSKPVSPQGSPQLPRSSSLFSSPSRRTAGKAACHAPLLSGDTGVSVHECCCCCCNADLIKLQALLCSHFVSRELCDFVLSNIEGQRTDLTSVSLLCLPHVDRHTETVAVILREFPEIALPYAEHYFGKDIDKWSYLVKTLLDMCKEEPTNDDSESKKEIIVAVLKGTLQQLSTIVTPSEFLALLPDDGCVGFFLPYLQQCYSRCASDSVSERLVTRTRQLAT

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003955 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09004 all species →	ALKBH8_N	Alkylated DNA repair protein alkB homolog 8, N-terminal	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF14763 all species →	HPS3_C	Hermansky-Pudlak syndrome 3 protein, C-terminal region	Repeat	Interproscan
PF14761 all species →	HPS3_N	Hermansky-Pudlak syndrome 3 protein, N-terminal	Repeat	Interproscan
PF03372 all species →	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015095 all species →	Domain	Alkylated DNA repair protein AlkB, homologue 8, N-terminal	Interproscan
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR017216 all species →	Family	Hermansky-Pudlak syndrome 3 protein	Interproscan
IPR029438 all species →	Domain	BLOC-2 complex member HPS3, C-terminal domain	Interproscan
IPR029437 all species →	Domain	BLOC-2 complex member HPS3, N-terminal domain	Interproscan
IPR005135 all species →	Domain	Endonuclease/exonuclease/phosphatase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR28633 all species →	HERMANSKY-PUDLAK SYNDROME 3 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008168 all species →	Molecular Function	methyltransferase activity	Interproscan
GO:0016706 all species →	Molecular Function	2-oxoglutarate-dependent dioxygenase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006996 all species →	Biological Process	organelle organization	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN12379-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.