Detailed information of ANN12379-RA in Leptoseris scabra

Genomic Location: Scaffold_8__1_contigs__length_51692913:47769614...47799542
NR annotation: KAJ7393481.1, Hermansky-Pudlak syndrome 3 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF09004ALKBH8_NAlkylated DNA repair protein alkB homolog 8, N-terminalDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF14763HPS3_CHermansky-Pudlak syndrome 3 protein, C-terminal regionRepeatInterproscan
PF14761HPS3_NHermansky-Pudlak syndrome 3 protein, N-terminalRepeatInterproscan
PF03372Exo_endo_phosEndonuclease/Exonuclease/phosphatase familyDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR015095DomainAlkylated DNA repair protein AlkB, homologue 8, N-terminalInterproscan
IPR036691Homologous_superfamilyEndonuclease/exonuclease/phosphatase superfamilyInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR017216FamilyHermansky-Pudlak syndrome 3 proteinInterproscan
IPR029438DomainBLOC-2 complex member HPS3, C-terminal domainInterproscan
IPR029437DomainBLOC-2 complex member HPS3, N-terminal domainInterproscan
IPR005135DomainEndonuclease/exonuclease/phosphataseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR28633HERMANSKY-PUDLAK SYNDROME 3 PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0008168Molecular Functionmethyltransferase activityInterproscan
GO:0016706Molecular Function2-oxoglutarate-dependent dioxygenase activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0006996Biological Processorganelle organizationInterproscan
GO:0003824Molecular Functioncatalytic activityInterproscan

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