Gene detail

Detailed information of ANN12413-RA in Leptoseris scabra

Genomic Location: Scaffold_8__1_contigs__length_51692913:48460773...48463047
NR annotation: KAJ7393393.1, DDB1- and CUL4-associated factor 10 [Desmophyllum pertusum]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8AVS9	DDB1- and CUL4-associated factor 10 OS=Xenopus laevis OX=8355 GN=dcaf10 PE=2 SV=1
Q6NWH1	DDB1- and CUL4-associated factor 10 OS=Danio rerio OX=7955 GN=dcaf10 PE=2 SV=2
Q5FW06	DDB1- and CUL4-associated factor 10 OS=Xenopus tropicalis OX=8364 GN=dcaf10 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008763 (this species only)
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR039085 all species →	Family	DDB1- and CUL4-associated factor 10	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14588 all species →	DDB1- AND CUL4-ASSOCIATED FACTOR 10	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0080008 all species →	Cellular Component	Cul4-RING E3 ubiquitin ligase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11802	DCAF10; DDB1- and CUL4-associated factor 10	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.