Genomic Location: Scaffold_8__1_contigs__length_51692913:48877590...48901777
NR annotation: CAH3038642.1, unnamed protein product [Porites lobata]
Species Leptoseris scabra · all data for this species · gene families
| CDS |
| ANN12439-RA |
| Transcript |
| ANN12439-RA |
| Protein |
| ANN12439-RA |
| UniProt accession | Description |
|---|---|
| Q05048 | Cleavage stimulation factor subunit 1 OS=Homo sapiens OX=9606 GN=CSTF1 PE=1 SV=1 |
| Q5R8K2 | Cleavage stimulation factor subunit 1 OS=Pongo abelii OX=9601 GN=CSTF1 PE=2 SV=1 |
| Q99LC2 | Cleavage stimulation factor subunit 1 OS=Mus musculus OX=10090 GN=Cstf1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002738 (this species only) |
| Ubiquitin family | E3|E3 adaptor Cullin RING|DWD · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF16699 all species → | CSTF1_dimer | Cleavage stimulation factor subunit 1, dimerisation domain | Domain | Interproscan |
| PF00046 all species → | Homeodomain | Homeodomain | Domain | Interproscan |
| PF00400 all species → | WD40 | WD domain, G-beta repeat | Repeat | Interproscan |
| PF02376 all species → | CUT | CUT domain | Domain | Interproscan |
| PF00125 all species → | Histone | Core histone H2A/H2B/H3/H4 | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001356 all species → | Domain | Homeobox domain | Interproscan |
| IPR015943 all species → | Homologous_superfamily | WD40/YVTN repeat-like-containing domain superfamily | Interproscan |
| IPR009057 all species → | Homologous_superfamily | Homeobox-like domain superfamily | Interproscan |
| IPR000558 all species → | Family | Histone H2B | Interproscan |
| IPR001680 all species → | Repeat | WD40 repeat | Interproscan |
| IPR032028 all species → | Domain | Cleavage stimulation factor subunit 1, dimerisation domain | Interproscan |
| IPR003350 all species → | Domain | CUT domain | Interproscan |
| IPR010982 all species → | Homologous_superfamily | Lambda repressor-like, DNA-binding domain superfamily | Interproscan |
| IPR009072 all species → | Homologous_superfamily | Histone-fold | Interproscan |
| IPR019775 all species → | Conserved_site | WD40 repeat, conserved site | Interproscan |
| IPR038184 all species → | Homologous_superfamily | CSTF1, dimerization domain superfamily | Interproscan |
| IPR044633 all species → | Family | Cleavage stimulation factor subunit 1-like | Interproscan |
| IPR036322 all species → | Homologous_superfamily | WD40-repeat-containing domain superfamily | Interproscan |
| IPR007125 all species → | Domain | Histone H2A/H2B/H3 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR44133 all species → | CLEAVAGE STIMULATION FACTOR SUBUNIT 1 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0000786 all species → | Cellular Component | nucleosome | Interproscan |
| GO:0030527 all species → | Molecular Function | structural constituent of chromatin | Interproscan |
| GO:0046982 all species → | Molecular Function | protein heterodimerization activity | Interproscan |
| GO:0003723 all species → | Molecular Function | RNA binding | Interproscan |
| GO:0005848 all species → | Cellular Component | mRNA cleavage stimulating factor complex | Interproscan |
| GO:0031124 all species → | Biological Process | mRNA 3'-end processing | Interproscan |
ANN12439-RA.
