Gene detail

Detailed information of ANN12439-RA in Leptoseris scabra

Genomic Location: Scaffold_8__1_contigs__length_51692913:48877590...48901777
NR annotation: CAH3038642.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN12439-RA

ATGTCGGCAATGGCGGACGGATTGAAAGAACGAGAAAACCTATATAAGCTGATGATAAGTCAACTTAGGTATGATGGATTTGAATCTATTGCGTCCACCTTGGCAAAAGTTGTTAACATCATCAGTGCATGCCCTCCAATGGCACGGCTACATCAAGTTGTCAATCTTGGGATTCAAGCTGAAACAGAAGGTACCAGGCCAGAGCAACCAGCGATCCCTGGCCTCACGCCACCAGTTGAAACAAATCGAGGAATTGATTTAGAGTATGAGCCAGAAGGGAATGAACTATCTGGAGAATGGCAAAGCTCCACCGCTGATGAATCATTCATGAGCAATCTCGAACTCCAGAAAGTAGATCAAGAGTCTGAGAGTGAGCCTGAGGACAAACCAGATGACTCACCCTCGCCAAACATGGTTCTACACCATATCATAAGAATCACTTCTGATAAGAAGCTTGCCGGCCCTCATCAAGACCCCAAACCAATTCAAGCATCAAATCCTTTGACCCTAAATGGGAATTTTGTGGATGCAGAAAGCATCTGCGAACAAGTTAAAATTGAACTTGTAAAGTACAATGTGTCGCAAGAGGTGTTTGCCAAAGCCGTGCTTGGAAAATCGCAAGGATATCTCTCTGAAATGCTCAAACATGGTGAAAGCTTCTTCCGTCCACAAGACCACACGCACTATAAGGGATGGATGAATTTTGAGACCATGCGACAGTTTCTTCTGAAGCCTGAGGCTGAACGCTTGAGGATTTACTATGAAAAAGGGGAAGAACTGAAGATGGAGAGATTAAAACGCAGGCAGATTGAGATAGGTCTAACTGAGGATTCCTCAAAGAAGAAAAGACGTTTAATTCCCACCGAGGCCAAAGCTGTCATGGAGGACTATTACAACCGCAACAAATACCTCTCTATTGAAAAGCGTCAAACATTAGCCAATGAGCTAGCCATTCCGGAACAGTGTGTAAGTGACTACTTCAAGAATCTTAGATCAAGAAAGAAACACGAGGAGCGCATGAAGTGTTTGCTCAAAGGTCTTGAAAGTGGCGACAAAGAGCTTGACAAAATGGATTCTGAACCTGCCGAGAGTAGTTTTGAAAATGGTGTGAATCATCAACTTCCATCTTGCTCAAGAAGTATTCCAGTTGTTACGATGAGTCTACCAGTTACAGGAGAGTCGTCTATACAGGTGAAGCCCCCAAGTTTGATACGACATTGTGGGAGAAGGTATAACGTCACTCCTGCAGTGACAATGGCTAACTTTCAAACCCAACGTCAACCAGCAAAGAGTGTATCTGAACCCGACTTAGTGGCATCGAAAATTGCCGCTCTCACTCAGAATCAGAGAGCAACAGTTACACACAAACAACCTGTAGAAGAAGAGGTGAAATTGGCAGCGAAAACAAGTGGGCATCATGATCGTGTTACTTTTGTCCGTCAAGAAGTGACACCATCTCCCACGTCTACACCTCGTCATTATGCTGCTCAAGAAGACGTCAGACATGATAGAAACTATTTGTTGTCTCAGGAATCGGCCTCTGGTGTTGACGCAGTGGAGACATTAACTTTTGACAGTCTGATAGATGGCTCCATGATGCTTCAAGGGGGGACGCCTGACAGTGAAGCATTGGAAGTTGGACAACATATATATGTGTACAAAACTTTCACACATCCTGTGGGCAGCAAAGGCTTAGTTGAGGCAGGAGATGAAGAGGAAAGTGCAATCACGGTACCAGTCCACCAGCAGCAATGTATGAAACTTACTACGTCACAGCACACAAGGCACCCTGCAGAACAGCCAGCTTTAGTCAAAATGGTGTTAGATGTTGAGAGAATGGTAGCAAAGAACACAATGCCTCAGACACAAGACCAGGGTGCTGGCACAAATCTGGAGAATCATCCTGTTATAAGGACTCTTTATGATCACATGGAGGAAGTAACAGCTGTTGAATTTCATCCCAGTGCATTGGTGTTGGCTTCAGGCAGTAAAGATTGCACTGTAAAGCTGTTTGACATATCAAAACCTTCAGTCAAAAAGGCCTACCGGTCCATTCAGGAGGCAGAGGTTGTCACATCAATGTCGTTTCATCCCACAGGAGACTTTATTCTTGTAGGAACAGAGCACCCAACCATTCGTCTCTATGATACAAACACTGGTCAATGTTTTGTGCCATCAAACCCTCGGGAATATCATACAGGAGCCATTAATATGGTGAAGTATTCTCCATCAGCTAATCTTTATGCATCGTGTAGTAAAGATGGGTCGATCAAGGTTTGGGACGGAGTCAGTAACAAATGCATACAAACATTCCCGCAAGCTCATAATGGCGCTGAGGTTTATTCCATTTGCTTTTCTCAAAACTCCAAGTATATTGTATCCAGCGGAAAAGACTCTCTGGTGTTCTTATGGGAACTCTCCACAGGAAGAGCTTTGAATATGTACACAGGAGCAACGATGTCAAATTACAGGACGCAGATTGTCTTCAATCACACGGAGGATTTCAGTGAGTTTAATTTCGGGTTGATTAGCAACCACAACATAGTGATTGTCGCTGATGAATCGAACAACAGCATAGCGTGCTGGGACACGAGAACAACAGAAAAACTGAAAACTCTAACTTCAGGTAACACTTGTTTTAACGTTCGTGCTTTCTTTCTCCCTCCAGGTCACAACAATCACATCCGCTGTATCACCCACTCGCCCTCGGGAGCTGCTTTTGTTTCGTGTAGTGATGACTTCAGAGCGAGGATGGCGCGCAGTATAAGCAGAAAGAAAGAAAGGCTAAGCGGGAAGAAAGAGAAGAGCAGAAAGCTAACGCCTAGTGATGTGAACGACAAGAGGAAGCGCAAGGTGAAAAGAAAGCAAACGTACAACAGATTCATCCACAGAGTCTTGAAGCAAGTTCACCCAGATGCTACCATTTCCAGGAGAGCTATGGTCATCATGAACTCGTTCGTCTGGGATATCTTCGATCGCACCACCATCGAAGCCGCTCGCTTGGCGAAGTACGCCAAGAAGTCGACCATCAGCTCTCGCGAGATTCAGACCGCCGTCAGGCTAATTCTGCCCGGTGAACTAGCCAAACACGCCATCAGTGAAGGAACCAAAGCCGTGACCAAATTCACCAGCCACAACCCTAAGTATCCGAAGCCTGCAATAACGGAGGCGTTGTTCTTGTTTGGCTTGGCATAA

Transcript

ANN12439-RA

Protein

Uniprot

Gene family

Uniprot term	Description
Q05048	Cleavage stimulation factor subunit 1 OS=Homo sapiens OX=9606 GN=CSTF1 PE=1 SV=1
Q5R8K2	Cleavage stimulation factor subunit 1 OS=Pongo abelii OX=9601 GN=CSTF1 PE=2 SV=1
Q99LC2	Cleavage stimulation factor subunit 1 OS=Mus musculus OX=10090 GN=Cstf1 PE=1 SV=1

Gene family	Subfamily
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16699	CSTF1_dimer	Cleavage stimulation factor subunit 1, dimerisation domain	Domain	Interproscan
PF00046	Homeodomain	Homeodomain	Domain	Interproscan
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF02376	CUT	CUT domain	Domain	Interproscan
PF00125	Histone	Core histone H2A/H2B/H3/H4	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356	Domain	Homeobox domain	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR000558	Family	Histone H2B	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR032028	Domain	Cleavage stimulation factor subunit 1, dimerisation domain	Interproscan
IPR003350	Domain	CUT domain	Interproscan
IPR010982	Homologous_superfamily	Lambda repressor-like, DNA-binding domain superfamily	Interproscan
IPR009072	Homologous_superfamily	Histone-fold	Interproscan
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR038184	Homologous_superfamily	CSTF1, dimerization domain superfamily	Interproscan
IPR044633	Family	Cleavage stimulation factor subunit 1-like	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR007125	Domain	Histone H2A/H2B/H3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44133	CLEAVAGE STIMULATION FACTOR SUBUNIT 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000786	Cellular Component	nucleosome	Interproscan
GO:0030527	Molecular Function	structural constituent of chromatin	Interproscan
GO:0046982	Molecular Function	protein heterodimerization activity	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005848	Cellular Component	mRNA cleavage stimulating factor complex	Interproscan
GO:0031124	Biological Process	mRNA 3'-end processing	Interproscan